DY257437

Overview
NameDY257437
Unique NameDY257437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1276
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257437 vs. ExPASy Swiss-Prot
Match: GCP2_HUMAN (Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 4.744e-39
Identity = 84/217 (38.71%), Postives = 133/217 (61.29%), Query Frame = 3
Query:  117 ELSTRLDDITEDNPLTLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQP-VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNA-SGTAISRSSLLCRSMLKFINSLLHYMTFEVLEPHWHVMHNRLQTAKSIDEVIQHHDFFP*QCLRECLLHFPDPLKKVEKLESL 761
            EL   ++DIT      LL++ALR + A  DP  +DL   +    L+ ++  +  +E K        +   ++++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+  +  S    + +  L + ML F+ ++ +YM FEV+EP WH++   L++A +ID+V+ HH  F   CL++C+L  P+ LK   KL S+
Sbjct:  538 ELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAHADPTELALSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHTGFLDTCLKDCMLTNPELLKVFSKLMSV 754          
BLAST of DY257437 vs. ExPASy Swiss-Prot
Match: GCP2_PONAB (Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.355e-38
Identity = 83/217 (38.25%), Postives = 133/217 (61.29%), Query Frame = 3
Query:  117 ELSTRLDDITEDNPLTLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQP-VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN-ASGTAISRSSLLCRSMLKFINSLLHYMTFEVLEPHWHVMHNRLQTAKSIDEVIQHHDFFP*QCLRECLLHFPDPLKKVEKLESL 761
            EL   ++DIT      LL++ALR + A  DP  +DL   +    L+ ++  +  +E K        +   ++++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+  +  S    + +  L + ML F+ ++ +YM FEV+EP WH++   L++A +ID+V+ +H  F   CL++C+L  P+ LK   KL S+
Sbjct:  538 ELRKPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAHADPTELTLSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLPSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGYHTGFLDTCLKDCMLTNPELLKVFSKLMSV 754          
BLAST of DY257437 vs. ExPASy Swiss-Prot
Match: GCP2_MOUSE (Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.355e-38
Identity = 86/221 (38.91%), Postives = 134/221 (60.63%), Query Frame = 3
Query:  117 ELSTRLDDITEDNPLTLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIK-----TSSDGVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNA-SGTAISRSSLLCRSMLKFINSLLHYMTFEVLEPHWHVMHNRLQTAKSIDEVIQHHDFFP*QCLRECLLHFPDPLKKVEKLESL 761
            EL   ++DI       LL++ALR + A  DP  +DL   +    L+ ++  +  +E K     T +D  +L    +++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+     S    + +  L + ML F+ ++ +YM FEV+EP WH++   L++A +ID+V+ HH  F   CL++C+L  P+ LK   KL S+
Sbjct:  538 ELRKPVEDIILTRLEALLELALRMSTANTDPFKDDLKIELMPHDLITQLLRVLAIETKQEKAMTHADPTEL----TLSGLEAFSFDYMVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHISFLDNCLKDCMLTNPELLKVFSKLMSV 754          
BLAST of DY257437 vs. ExPASy Swiss-Prot
Match: GCP2_DROME (Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.931e-32
Identity = 68/201 (33.83%), Postives = 120/201 (59.70%), Query Frame = 3
Query:  117 ELSTRLDDITEDNPLTLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRS-MLKFINSLLHYMTFEVLEPHWHVMHNRLQTAKSIDEVIQHHDFFP*QCLRECLL 716
            EL+  +D +       LL + LR ++A  DP  +DL C +    L+ +M+     +I    +    +  + ++GLE F+ +Y+V+WP S+V++  +++KYQM+FR LF+CKHVERQLC  W+ +  AR F     ++ R++   R  M+  I +L +YM  E++EP+WH+   +++T +++D V++ H  F   CL+ C+L
Sbjct:  527 ELTKNVDHVLPMTLENLLGLTLRISSARNDPYKDDLHCELLPYDLVTQMS-----KIMKKEENWQAQPRLDLSGLECFAFTYEVKWPCSLVLNHISISKYQMLFRQLFYCKHVERQLCKIWKENSIARQFEPQAASLYRAAFTLRQRMMNAIQNLEYYMMIEIIEPNWHIFIEKMKTVENVDNVLRLHQDFLDSCLKNCML 722          
BLAST of DY257437 vs. ExPASy Swiss-Prot
Match: SPC97_DICDI (Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.691e-28
Identity = 77/226 (34.07%), Postives = 123/226 (54.42%), Query Frame = 3
Query:  111 LRELSTRLDDITEDN-----------PLTLLDIALR----------STAAAADPCHEDLTCSVERSSLLKRMATLKFVEIKTSSDGVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGAR-AFNASG--TAISRSSLLCRSMLKFINSLLHYMTFEVLEPHWHVMHNRLQTAKSIDEVIQHHDFFP*QCLRECLL 716
            L +LS R   I+E++           P  L+D  L           +T    +    ++T +   SS    + T     +  S+   ++ +   + G+E+ + +Y V WPLS++ISRK+L KYQ++FR LF CKHVE+ L   W  HQ  R ++N  G  T +S + LL   M+ F+ +L +YM  EVLEP+W+ M N ++T+K++D+VI+ H+ F   CL EC+L
Sbjct:  820 LLQLSLRTSSISEEDEFKDDLECEFIPYKLVDQLLNIININNFNNPTTTTTTNTSSNNITATTNTSSNNTTINTTVNTTLIQSTSAHEVLKTNKLFGIESLAFNYNVGWPLSLIISRKSLIKYQIIFRHLFLCKHVEKVLVDTWSQHQFRRSSYNKPGLSTLLSFTHLLRHRMIHFLQNLEYYMMLEVLEPNWNKMKNSIKTSKTVDDVIRIHNDFLETCLTECML 1045          
BLAST of DY257437 vs. ExPASy Swiss-Prot
Match: ALP4_SCHPO (Spindle pole body component alp4 OS=Schizosaccharomyces pombe GN=alp4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.794e-23
Identity = 79/238 (33.19%), Postives = 115/238 (48.32%), Query Frame = 3
Query:  168 LDIALRS--TAAAADPCHEDLTCSVERSSL---LKRMATLKFVEIKTSSDGVDL--------------------------------EQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVH--QGARAFNASGTAI---SRSSLLCRS-MLKFINSLLHYMTFEVLEPHWHVMHNRLQTAKSIDEVIQHHDFFP*QCLRECLLHFPDPLKKVEKL 752
            LD+ALR   T  A DP  E +T  V ++SL   L  + ++  +E  TSS G ++                                     I G ET  L YKV +PLS+++SRKA+ +YQ++FR     +HVE QL  +W  H    A   N+S   I    R+S L R+ ML F+  +++Y T EV+E HW      L+ A+++D ++Q H  F   CL+EC+L     LK   KL
Sbjct:  469 LDLALRQPGTITATDPHKEYVTVEVNQTSLIDWLMHIVSISGLEEGTSSQGNEVWNESITKQADVGNETRNFESEHNRSTQGTSKVGSDKDINGFETMQLCYKVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNSAWRLNSSNAKIEQWKRNSWLLRTRMLSFVQKIIYYTTSEVIETHWGKFMGELENARTVDNLMQEHIDFLDTCLKECMLTNSRLLKVQSKL 706          
BLAST of DY257437 vs. ExPASy Swiss-Prot
Match: GCP3_XENLA (Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.537e-13
Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  312 LEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQG----ARAFNASGTAISRSSLLCRSMLKFINSLLHYMTFEVLEPHWHVMHNRLQTAKSIDEVIQHHDFFP*QCLRECLL 716
            LE     TG + FSL Y V  P++ V +R+ ++ Y  VF  L+  K +E  L   W+ H       +        + +  +L   M+ FI+ + +Y+TFEVLE  W  + N++  A+ +D +I  HD F    +  CLL
Sbjct:  625 LEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIWKGHMCNAKLLKGMPELSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVLKAQDLDHIIAAHDVFLDTIISRCLL 763          
BLAST of DY257437 vs. ExPASy Swiss-Prot
Match: GCP3_HUMAN (Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.219e-12
Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  312 LEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQG----ARAFNASGTAISRSSLLCRSMLKFINSLLHYMTFEVLEPHWHVMHNRLQTAKSIDEVIQHHDFFP*QCLRECLL 716
            LE     TG + FSL Y V  P++ V +R+ ++ Y  VF  L+  K +E  L    + H       R        + +  +L   M+ FI+ + +Y+TFEVLE  W  + N++Q A+ +D +I  H+ F    +  CLL
Sbjct:  626 LEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLL 764          
BLAST of DY257437 vs. ExPASy Swiss-Prot
Match: GCP3_MOUSE (Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.898e-12
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 3
Query:  312 LEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQG----ARAFNASGTAISRSSLLCRSMLKFINSLLHYMTFEVLEPHWHVMHNRLQTAKSIDEVIQHHDFFP*QCLRECLL 716
            LE     TG + FSL Y V  P++ V +R+ ++ Y  VF  L+  K +E  L    + H       R        + +  +L   M+ FI+ + +Y+TFEVLE  W  + NR+Q A+ +D +I  H+ F       CLL
Sbjct:  624 LEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNRVQQAQDLDHIIAAHEAFLNTITSRCLL 762          
The following BLAST results are available for this feature:
BLAST of DY257437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GCP2_HUMAN4.744e-3938.71Gamma-tubulin complex component 2 OS=Homo sapiens ... [more]
GCP2_PONAB2.355e-3838.25Gamma-tubulin complex component 2 OS=Pongo abelii ... [more]
GCP2_MOUSE2.355e-3838.91Gamma-tubulin complex component 2 OS=Mus musculus ... [more]
GCP2_DROME1.931e-3233.83Gamma-tubulin complex component 2 homolog OS=Droso... [more]
SPC97_DICDI1.691e-2834.07Spindle pole body component 97 OS=Dictyostelium di... [more]
ALP4_SCHPO2.794e-2333.19Spindle pole body component alp4 OS=Schizosaccharo... [more]
GCP3_XENLA1.537e-1330.94Gamma-tubulin complex component 3 homolog OS=Xenop... [more]
GCP3_HUMAN2.219e-1230.94Gamma-tubulin complex component 3 OS=Homo sapiens ... [more]
GCP3_MOUSE2.898e-1231.65Gamma-tubulin complex component 3 OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CB11FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257437 ID=DY257437; Name=DY257437; organism=Citrus sinensis; type=EST; length=1276bp
CTAGGGAGTGGCGTTACATAGCAGCTCATCCTTTGCTGCTACCGGCGCTT
TAACTTTTTCAACGATCGTTGTTACAGGAGATTTTTTGACTCACTCATAG
ATCTTTGCCGTTGAGAGAACTCTCGACTCGGCTTGACGACATTACAGAGG
ACAATCCGCTGACTCTGCTAGACATTGCTCTGCGTTCCACTGCTGCAGCA
GCAGATCCTTGTCATGAGGACCTAACATGTTCTGTCGAGAGATCATCCTT
GCTTAAAAGAATGGCCACACTCAAATTTGTTGAAATTAAGACTTCCTCTG
ATGGCGTGGATTTAGAGCAGCCAGTGAGCATTACTGGTCTTGAGACGTTT
TCTTTAAGCTACAAGGTCCAGTGGCCATTATCTATTGTTATATCAAGAAA
AGCCCTAACAAAGTATCAGATGGTTTTTCGCTTACTTTTTCACTGTAAAC
ATGTAGAGCGCCAGCTGTGTGGGGCTTGGCAAGTGCACCAAGGAGCTCGT
GCCTTTAACGCAAGTGGAACTGCTATCTCTAGATCATCTCTGCTCTGCCG
CAGCATGCTTAAGTTTATTAATAGCCTTCTTCATTATATGACATTTGAGG
TTCTTGAACCCCATTGGCATGTGATGCATAATAGACTTCAAACTGCAAAG
AGCATAGATGAGGTCATACAACATCATGATTTTTTCCCTTGACAGTGTCT
CAGAGAATGCTTGCTTCATTTTCCTGATCCTCTCAAGAAGGTGGAAAAGC
TTGAATCCTTGGTGCCTGCCAAATGCGGCCCCCACTCCTGGGGTGAAATC
ATCTTTCTTATGACCTTCCCCAAGCAAAAGGAAACCTCTGATGGTTTTTT
CTGGGCAAAAAAAGTCCAAGCAAATTGAATTAAAAAACCCGGCCCCAGGT
ACAAAAATTATTAAACCAAAGATGCCCCCTCCCCCGAATCCAACCCCCAA
ATTGGAGAAGGAAATTCATAATGAACTTTCAAATTTGGGACAACATTTTT
AGAACAAAATTTCCCCAAAACAACCCCATATTGACCCCCCCCTGGCACAG
GGGGTTCCTTGGGCGTTGGGTTTTGAAAAAAAGAAACAAAATTTTTATAT
CCCCCCCCCTTAATTTTTTAAATCGCCGGCCCCCAAAAAAAAAAGATTTT
TTAAAGCGCCCCCCCGCCCCTAGGGTTTGTGTTAAAACCAAAAGGGGGCG
CGCCCCTTGCTGCGTCCTTTATTTATCTCTTCCCCCCTCCCTCCCCTCTC
GCCCCCTCCCCCCCCCCTTTTCTTTT
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