CX301114

Overview
NameCX301114
Unique NameCX301114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX301114 vs. ExPASy Swiss-Prot
Match: ABPF_DICDI (Actin-binding protein F OS=Dictyostelium discoideum GN=abpF PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.445e-32
Identity = 68/209 (32.54%), Postives = 131/209 (62.68%), Query Frame = 2 
Query:   20 ESALSEEKKQNQANAAKEEIVNLEVQDSKLL-ITHQNVSEFTLAFYRVDLEVLFSRNPFITQSKDEFSYIQPSEVRKVKLENIRNLEKLSYDIPDKLKGYNLYVELKTDDKTLSVNYFSTSLKVQIIENYGQVKVLDNE-NKPLIKVYVKCFAKAKDGKVSFYKDGYTDLRGRFDYATLNSNDISNIDKFAIFIMSDELGSLIKEAKAP 640
            E  +  E++QN+  A+ E   ++  + ++ + + + N+ + T+++Y +D+E LFS NPF+ Q    F Y+ P++     L++       ++ IP++    N+ +++ +     ++  +S +L V I E  GQ++V+  + ++P+ K Y+K ++K K+G V F+KDGYTD+ G FDY+T++S DISN+ K +I ++S++ G++IKEAK P
Sbjct: 2157 EKEIDRERRQNKM-ASNEPTFDISSESNRTISVNYSNLVDITVSYYVMDIEHLFSTNPFVQQELGHFLYVTPNKKESFLLKDKSGT--FNFKIPNEFANSNVVIDVVSAQIHHNITVYSNNLAVYITEKVGQLRVVHKQKSQPISKTYIKVYSKNKNGSVEFFKDGYTDIAGYFDYSTVSSLDISNVSKLSILVLSNQYGAVIKEAKPP 2362
The following BLAST results are available for this feature:
BLAST of CX301114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ABPF_DICDI2.445e-3232.54Actin-binding protein F OS=Dictyostelium discoideu... [more]
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Properties
Property NameValue
Genbank descriptionC08005H08SK PhyRootSw1 Citrus sinensis cDNA clone C08005H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301114 ID=CX301114; Name=CX301114; organism=Citrus sinensis; type=EST; length=730bp
TGGTGAGATTATGGAAGATGAAAGTGCTCTTAGTGAAGAGAAGAAACAGA
ATCAAGCTAATGCAGCCAAAGAAGAGATAGTTAACCTGGAAGTGCAAGAC
TCAAAGCTCCTCATTACTCATCAGAACGTAAGCGAGTTCACTTTAGCTTT
CTATAGAGTAGACCTTGAAGTGCTATTCTCCAGAAATCCTTTCATCACTC
AAAGCAAAGATGAATTCTCTTATATTCAACCAAGTGAAGTCAGAAAGGTG
AAGCTAGAAAATATCAGAAATCTTGAGAAATTATCTTATGACATTCCTGA
CAAACTTAAGGGATACAATCTCTATGTTGAACTCAAAACTGATGACAAGA
CATTATCTGTGAATTACTTCTCCACATCTCTTAAGGTTCAGATCATTGAG
AACTATGGACAAGTTAAAGTATTAGATAATGAGAACAAGCCTCTCATTAA
GGTTTATGTGAAGTGTTTCGCTAAGGCCAAGGATGGCAAAGTATCATTCT
ATAAGGATGGTTATACTGATTTGAGAGGAAGATTCGACTATGCAACTTTG
AACTCTAATGATATCAGCAACATCGATAAGTTTGCAATCTTCATCATGAG
TGATGAGCTTGGTTCTTTGATCAAAGAAGCTAAAGCTCCAAATAAGTTGG
GAAGACTGGAGACCAAGCTTTTGGTTAAGGCTAAATAAGCTAAGCCAGAT
ATTTAATTCCTCATTTATTTTCATAATTAT
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