CX301071

Overview
NameCX301071
Unique NameCX301071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11523 contig Csv1_Contig11523:299..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX301071 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.763e-39
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 2 
Query:   11 VFRGASTDAKDLLFTVGTSSVLQLKTALNVFLAGNTKQEVCDFKVKGSWTERSCVVYAGESNTIVAQMHKKETVGSFFLNKDRFAVTVYPNIDYAFIVALIVILDDINGDNTA 349
            VFRG STD +DLL+TV  SS+LQLKT L+VFL  N  ++ CDF+VKGSW ERSCVVYAGES+ IVAQMH+K TV S FL KD F+VTVYPN+DYAFI +L+VILDD+N ++ A
Sbjct:  104 VFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA 216
The following BLAST results are available for this feature:
BLAST of CX301071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH4.763e-3968.14UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC08005D10SK PhyRootSw1 Citrus sinensis cDNA clone C08005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301071 ID=CX301071; Name=CX301071; organism=Citrus sinensis; type=EST; length=564bp
GAAGCATTTTGTATTCAGGGGAGCAAGCACAGATGCCAAAGATCTTCTCT
TTACTGTGGGAACATCTTCAGTGCTCCAATTGAAGACCGCTTTGAATGTT
TTTTTGGCAGGTAACACCAAACAAGAGGTTTGTGATTTTAAGGTCAAAGG
CAGCTGGACAGAACGATCCTGTGTTGTTTATGCAGGAGAGTCCAACACAA
TTGTTGCCCAGATGCACAAAAAGGAAACCGTTGGAAGCTTCTTCCTTAAC
AAGGATAGATTCGCCGTGACAGTTTATCCCAACATCGACTATGCATTTAT
AGTAGCCCTGATTGTGATCCTTGATGACATCAACGGTGACAACACTGCAT
GAGATTACTCATATTTCAGATTTCGGAATTGCTTCTATAAATCACGTAAA
TAAGTGTGTGGTTATGTATTTTAAGAATGTTCTTGTTTGCCAGTTGCTAC
ATTAATTTCCCTTGTGTCCTAAGTTGTGCAATATAACTTGTCAAAGTATT
TGCTTTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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