CX301069

Overview
NameCX301069
Unique NameCX301069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.630e-74
Identity = 150/207 (72.46%), Postives = 162/207 (78.26%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELL---PRSLEDSFRS-ISFSKS-LDH-SVDFSSARFSEIGALRED-DEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXX-----EHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            VPSGSYNIAQI YELNVLGTRGPRRMHCIM+SIP SS++ GGSVP QPE L   P SL+DSFRS ISFSKS  DH S+DFSS+RFSE+G   +D +E+   RPLILKNK PRWHEQLQCWCLNFRGRVTVASVKNFQL+                       E DK+ILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct:  239 VPSGSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFRSNISFSKSSFDHRSLDFSSSRFSEMGISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.187e-72
Identity = 146/209 (69.86%), Postives = 162/209 (77.51%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPE-LLPRSLEDSFRS-ISFSKS--LDHSV------DFSSARFSEI-GALREDDEDG--KVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLI-XXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            +PSGSYNIAQ+ YELNVLGTRGPRRMHC+MHSIPASS++ GG VPGQPE ++PR+ E+SFRS  SFSKS  +D S+      DFSSARFS+I G     DE+G  K RPL+L+NK PRWHEQLQCWCLNFRGRVT+ASVKNFQLI                   E DKIILQFGKV KDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct:  237 MPSGSYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTTSFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKIILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.629e-71
Identity = 140/212 (66.04%), Postives = 166/212 (78.30%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPE-LLPRSLEDSFRSI-----------SFSKSL-DHSVDFSSARFSEI-GALREDDEDGKV--RPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLI-XXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            VPS +YNIAQ++YELNVLGTRGPRRM C+MHSIPASS++ GG VPGQPE ++PR+LEDSFRS            SFSKS+ D S+DFSSARFS+I G++   D++G++  RPL+L+NKPPRWHEQLQCWCLNFRGRVT+ASVKNFQL+                   + +K+ILQFGKV +DMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct:  237 VPSVTYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDSFRSTTSFSQSFRSTTSFSKSIMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLVAAPSPPPAGAPTPSQPGPADPEKVILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.684e-70
Identity = 147/219 (67.12%), Postives = 163/219 (74.43%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELL-PRS-LEDSFRSISFSKS----LDHSVDFSSARFSEI-GALREDD----EDGKVR---PLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEH----------DKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            VPSGSY IAQ++YELNVLGTRGPRRMHC M+SIPASS+  GG+VPGQP+++ PRS L++SFRSI+ S S     D+S DFSSARFS+I G L ED     E+GK R   PL+LKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLI                              DKIILQFGKVGKDMFTMD+RYPLSAFQAFAICLSSFDTKLACE
Sbjct:  237 VPSGSYKIAQVSYELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFRSITSSSSRKITYDYSNDFSSARFSDILGPLSEDQEVVLEEGKERNSPPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANQPQPQPQPQPQPQPLTQPQPSGQTDGPDKIILQFGKVGKDMFTMDFRYPLSAFQAFAICLSSFDTKLACE 455          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.730e-70
Identity = 135/208 (64.90%), Postives = 160/208 (76.92%), Query Frame = 1
Query:    4 PSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPE-LLPRSLEDSFRSISFSKS--LDHSVDFSSARFSEI--------GALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXX---EHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            PS +Y+IAQ++YELNVLGTRGPRRM+C+MHSIPASS++ GG+VP QP+ +L RSL++SF SISFSKS  +D S+ FSS+R+S+I        G    D ++ K RPLIL+NK PRWHEQLQCWCLNF+GRVTVASVKNFQL+                     +HDK+ILQFGKV KDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct:  238 PSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISFSKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.377e-67
Identity = 137/210 (65.24%), Postives = 155/210 (73.81%), Query Frame = 1
Query:    4 PSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPE-LLPRSL-EDSFRSISFSKS--LDHSVDFSSARFSEI---------GALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLI---XXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            P  +Y+IA I+YELNV GTRGPRRM C+MHSIPASS++ GG+VP QP+ +L  SL E SFRS+SFSKS  +DHS+ FSSA+FS+I         G +  DDE+ K  PLIL+NK PRWHEQLQCWCLNFRGRVTVASVKNFQLI                     EHDK+ILQFGKV KDMFTMDY YPLSAFQAFAI LSSFDTKLACE
Sbjct:  231 PCSTYSIANISYELNVFGTRGPRRMCCLMHSIPASSLEAGGTVPSQPDSILAHSLNESSFRSVSFSKSSVMDHSMHFSSAQFSDISIGDGPRIGGRVLSDDEECKETPLILQNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPVPPPPPEHDKVILQFGKVAKDMFTMDYHYPLSAFQAFAISLSSFDTKLACE 440          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.296e-67
Identity = 142/229 (62.01%), Postives = 158/229 (69.00%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQP-ELLPRSLEDSFRSI--SFSKS--LDHSVDFSSARFSEIG--ALR--EDDEDG----KVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXE---------------------HDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            VP+G Y I Q+ YELNVLGTRGPRRM C MHSIPAS+++ GG VPGQP ELLPR  E+SFRS+  SFSK    DHS DFSS+RFSE G  AL+  E ++DG    K RPL+L+NK PRWHEQLQCWCLNFRGRVTVASVKNFQLI                  +                     HD +ILQFGKV KDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct:  234 VPTGCYPIVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPKELLPRLFEESFRSMATSFSKYSITDHSTDFSSSRFSEFGGGALQGQEQEQDGDDVNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAPQPSSGAASEPSQAGQAAQQQTQPSQPSSSSSSSSSNHDTVILQFGKVAKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 462          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.180e-66
Identity = 136/215 (63.26%), Postives = 153/215 (71.16%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPE-LLPRSLEDSFRSISFSKS---LDHSVDFSSARFSEI-GALREDDED----GKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXE-----------HDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            +P+GSY IA + YELNVLGTRGPRRM C MHSIPAS++D  G VPGQPE LLP   E+SFRS + S     +D S+DFSS+RFSEI G+  +  ED     K RPL+L+NK PRWHEQLQCWCLNFRGRVTVASVKNFQLI                  +           H K+ILQFGKVGKDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct:  237 LPTGSYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPFEESFRSTNTSSRFSFMDRSLDFSSSRFSEISGSANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAASSESSQLEQQQQQQQQNHASSSSSASDHGKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.648e-66
Identity = 128/207 (61.84%), Postives = 149/207 (71.98%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLI------------XXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            VPSGSYNIAQ+ YELN+LGTRGPRRM+CIMHSIP+ +++ GG+VP QPE L RSL++SFRSI  SK ++HS DF+          R  +E+GKVRPL+LK KPPRW + L+CWCLNF+GRVTVASVKNFQL+                               HDKIIL FGKVGKDMFTMDYRYPLSAFQAFAI LS+FDTKLACE
Sbjct:  233 VPSGSYNIAQVTYELNLLGTRGPRRMNCIMHSIPSLALEPGGTVPSQPEFLQRSLDESFRSIGSSKIVNHSGDFT----------RPKEEEGKVRPLVLKTKPPRWLQPLRCWCLNFKGRVTVASVKNFQLMSAATVQPGSGSDGGALATRPSLSPQQPEQSNHDKIILHFGKVGKDMFTMDYRYPLSAFQAFAISLSTFDTKLACE 429          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.489e-57
Identity = 114/195 (58.46%), Postives = 136/195 (69.74%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            VP+G+Y ++ I+YELNVLG RGPRRM+CIM SIP S++  GG  P Q E  P S  DSF SISF +S    +D ++++ S            K   L+LKNK PRWHEQLQCWCLNFRGRVTVASVKNFQL+                  E DK+ILQFGK+GKD+FTMDYRYP+SAFQ+FAICLSSFDTK+ACE
Sbjct:  228 VPAGNYPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEF-PLSGLDSFPSISFFRSKSARIDSATSQLST----------QKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDENGPTNQ--------EQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403          
The following BLAST results are available for this feature:
BLAST of CX301069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
TLP10_ARATH7.630e-7472.46Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP8_ORYSJ4.187e-7269.86Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP3_ORYSJ4.629e-7166.04Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP1_ARATH6.684e-7067.12Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP14_ORYSJ8.730e-7064.90Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP13_ORYSJ2.377e-6765.24Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP7_ORYSJ5.296e-6762.01Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP12_ORYSJ1.180e-6663.26Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP5_ARATH7.648e-6661.84Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP6_ORYSJ6.489e-5758.46Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC08005D08SK PhyRootSw1 Citrus sinensis cDNA clone C08005D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301069 ID=CX301069; Name=CX301069; organism=Citrus sinensis; type=EST; length=736bp
GTCCCAAGTGGCAGCTATAATATAGCCCAAATAGCTTATGAACTCAATGT
GCTTGGCACACGAGGCCCCAGAAGGATGCACTGCATCATGCACTCAATCC
CAGCCTCATCAATTGATGTAGGTGGCTCTGTTCCTGGCCAGCCAGAGCTT
CTTCCCCGCTCTCTTGAGGACTCATTCCGGAGCATCTCCTTCTCAAAATC
ACTGGATCACTCTGTTGACTTCAGCAGCGCACGCTTTTCTGAAATTGGTG
CGCTCAGAGAGGATGATGAGGATGGCAAAGTGAGACCCTTGATCCTCAAA
AACAAGCCCCCAAGATGGCATGAACAATTACAGTGTTGGTGTCTCAATTT
TCGGGGGCGGGTGACTGTCGCATCTGTTAAGAATTTTCAGTTGATTGCAG
CTACACAACCAGCTGCTGGTGCACCCACTCCCTCTCAACCAGCGCCACCT
GAACATGATAAGATCATTCTCCAGTTTGGCAAGGTTGGGAAAGATATGTT
TACTATGGACTATCGATATCCACTCTCTGCATTTCAGGCGTTTGCTATTT
GCTTGAGCAGCTTTGACACCAAACTGGCCTGTGAATAGAACAATAAATGA
TAGATATCAAAAGTCTGGTGGACTGCGACATCTTTTTTCCCCATTTTTCT
TTGTAATTTGTTTCCTATACGTTCAGTGCAGGATAGGGAATTGCTGTTAA
TGTTATTCGTTTATTGTAAAATCTCAATTGTAACTC
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