CX301067

Overview
NameCX301067
Unique NameCX301067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3990 contig Csv1_Contig3990:1157..1873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_THEEB (Chaperone protein dnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = -2
Query:  420 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADL 716
            V PDP  +R+G NIL   K+SY+ AILG  I V TVDG  +LKIPAGTQP T LV+  +GVP +     RGD L+ V VEIP  ++ EER+L+E+LA +
Sbjct:  255 VQPDPEFQREGNNILSRIKISYLQAILGCRISVSTVDGEAELKIPAGTQPGTVLVLEGRGVPRVGNPVARGDHLITVDVEIPTHITHEERELLEKLAKI 353          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNPX (Chaperone protein dnaJ OS=Synechococcus sp. (strain WH8102) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.205e-22
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = -2
Query:  426 PVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELA 704
            P L+RDG NIL T  VSY+ AILG TI+V TVDG   L+IP GTQP T L +A KG+P L     RGDQ V+V V++P RLS  ER L+EELA
Sbjct:  260 PRLRRDGLNILSTVNVSYLQAILGDTIEVETVDGDTVLEIPPGTQPGTVLTLANKGIPKLGNPVARGDQRVQVMVQLPTRLSDPERTLLEELA 352          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAA5 (Chaperone protein dnaJ OS=Cyanothece sp. (strain ATCC 51142) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = -2
Query:  381 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTASRR*LLG 716
            V PD V  RD  NIL    +SY+ AILG T+ V TVDG  +L IPAGTQPNT L +   GVP L    +RGD L+ V+V+IP R+++EER+L+E+LA + KG++  +  L G
Sbjct:  258 VEPDKVFTRDKMNILSEITISYLQAILGCTVTVDTVDGEQELTIPAGTQPNTILTLENLGVPKLGNDAIRGDHLITVKVDIPTRINAEERELLEKLAHI-KGQSHGKGGLEG 368          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP4 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = -2
Query:  420 DPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADL 707
            DP  +R+G NIL   K+SY+ AILG+ + V TVDG V+L IP GTQPNT L +   GVP L     RGD L+ V +EIP R+S+EER+L+E+LA +
Sbjct:  259 DPEFRREGINILSEVKISYLQAILGSRLMVNTVDGEVELTIPPGTQPNTVLTLENHGVPRLGNPVSRGDHLITVLLEIPTRISAEERELLEKLAKI 354          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ1_SYNY3 (Chaperone protein dnaJ 1 OS=Synechocystis sp. (strain PCC 6803) GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = -2
Query:  381 RDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTASRR*LLG 692
            R+G NI    +VSY+ AILG  ++V TVDG  +L IPAGTQPNT L +  KGVP L  + +RGD L+ V+V+IP R++SEER+L+E LA + KG++  +  L G
Sbjct:  267 REGMNIRSNLEVSYLQAILGCRLEVDTVDGKAELTIPAGTQPNTVLTLENKGVPKLGNATIRGDHLITVKVQIPTRINSEERELLERLATI-KGESHGKGGLEG 369          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNP2 (Chaperone protein dnaJ OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.867e-21
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = -2
Query:  396 DPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTASR 707
            D   +RDGTNIL   ++SY+ AILG T+KV TVDG  DL IPAG QPN  L++  KGVP L     RGD L+ V+V IP ++S EE++L+ +LA L KG   S+
Sbjct:  262 DKEFRRDGTNILSEIEISYLQAILGDTVKVKTVDGTEDLTIPAGLQPNKVLILEGKGVPKLGNPVSRGDHLITVKVMIPTKVSREEKELLHQLAKL-KGTEHSK 364          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_MICAN (Chaperone protein dnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.159e-21
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = -2
Query:  396 DPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTASR 707
            D   +R+G +I     +SYI AILG TIKV TVDG  DL IPAGTQPNT L++  KGVP L     RGD  + V++ IP R++ EER+L+E+LA + +G+T  +
Sbjct:  259 DAEFQREGNDIKSDITISYIQAILGCTIKVNTVDGQEDLTIPAGTQPNTVLILENKGVPKLGNPVSRGDHRITVKISIPTRVTGEERELLEKLAKV-RGETVGK 361          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_NOSP7 (Chaperone protein dnaJ OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = -2
Query:  405 DPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKT 707
            D   +RDG NIL   K+SY+ AILG  ++V TVDG V+L IPAGTQPNT + +  +GVP L     RGD ++ V ++IP +++ EER+L+E+LA +   +T
Sbjct:  261 DEEFQRDGINILSEIKISYLQAILGCRLEVDTVDGPVELIIPAGTQPNTVMKLENRGVPRLGNPVSRGDHMLNVLIDIPNKVTPEERELLEKLAKIKGDRT 361          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP8 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 8801) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = -2
Query:  381 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTASRR*LLG 716
            V PD    R+G NI     +SY+ AILG  +++ TVDG  +L IPAGTQPNT L++   GVP L  S +RGD L+ V++ IP R+++EER+L+E+LA + KG++  +  L G
Sbjct:  257 VEPDKEFTREGMNIHSEITISYLQAILGCKLQINTVDGPQELVIPAGTQPNTELMLEDHGVPKLGNSAIRGDHLINVKIAIPTRINNEERELLEKLAHI-KGQSHGKGGLEG 367          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMM (Chaperone protein dnaJ OS=Prochlorococcus marinus (strain MIT 9313) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  426 PVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELA 704
            P L+RDG  +L    VSY+ AILG  I+V TVDG   L+IPAGTQPN  L +  KG+P L     RG+Q + + V++P RLS EER L+EELA
Sbjct:  260 PQLRRDGITVLSEVNVSYLQAILGDIIEVDTVDGNTSLEIPAGTQPNAVLTLENKGIPKLGNPVARGNQRISINVKLPIRLSDEERGLLEELA 352          
The following BLAST results are available for this feature:
BLAST of CX301067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
DNAJ_THEEB1.688e-2253.54Chaperone protein dnaJ OS=Thermosynechococcus elon... [more]
DNAJ_SYNPX2.205e-2259.14Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_CYAA56.416e-2250.00Chaperone protein dnaJ OS=Cyanothece sp. (strain A... [more]
DNAJ_CYAP41.429e-2153.13Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNAJ1_SYNY31.429e-2150.96Chaperone protein dnaJ 1 OS=Synechocystis sp. (str... [more]
DNAJ_SYNP21.867e-2151.92Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_MICAN4.159e-2150.00Chaperone protein dnaJ OS=Microcystis aeruginosa (... [more]
DNAJ_NOSP72.064e-2047.52Chaperone protein dnaJ OS=Nostoc punctiforme (stra... [more]
DNAJ_CYAP83.520e-2046.43Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNAJ_PROMM4.598e-2052.69Chaperone protein dnaJ OS=Prochlorococcus marinus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08005D05SK PhyRootSw1 Citrus sinensis cDNA clone C08005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301067 ID=CX301067; Name=CX301067; organism=Citrus sinensis; type=EST; length=717bp
GAATTCGGCACGAGGTTTTTTTTTTTTTTTTGCAAAATTAAAGGATGGTA
TTATTGCACAAAATCTAGTCACACTCCAAAAAATAATTAATAGGTAACTT
ATGAAATCAAGTAGAAAACAAAATTAAAGAGGGATGCATCTCCCATTTCA
CCTCCATTAACCATTCTCAAAGATATCTTCTTGTGGTCAAAAGTATAGCA
ATGTAATTTCACCTACTACTACAGAAACTTGCTTACCCCATTTCCTCAGC
TCAGACACACTGAGAACTGTCAAATTCAGAAATCCCCTTATCATAAGCCA
TATAGACTCAGCAATGACCGCCATAGAATGAAGAATGTTTCTTCGGGGTG
AGCAACATAAATTTGATAAACATAAAAAGGCCCAAGCAACTATCTCCTGC
TTGCTGTCTTTCCCTTGCTCAGATCAGCAAGCTCCTCAATAAGTTTTCTC
TCTTCACTGCTCAATCTTTTCGGGATTTCAACTTGGACGCGTACCAACTG
ATCTCCTCTCATGTTGCTTTTATTTAGTACTGGTACCCCTTTCTTTGCCA
TAACAAGTGTTGTGTTCGGCTGGGTCCCAGCTGGGATCTTCAAATCAACC
ATGCCATCCACTGTTGGGACCTTTATGGTAGTCCCCAAAATTGCATCTAT
ATATGACACTTTGCAGGTATATAAAATGTTGGTACCATCACGTTTTAGCA
CAGGGTCTGGGATAACT
back to top