CX301066

Overview
NameCX301066
Unique NameCX301066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_PECGU (40S ribosomal protein S21 OS=Pectinaria gouldii GN=rps-21 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND+GE+VD+YIPRKC+ATN I+ AKD +SVQ+N+AE+D +TGR TGK+I Y L G +R +G A+  V  L  +D ++
Sbjct:    3 NDQGEIVDVYIPRKCSATNNILAAKDHASVQINMAEIDPQTGRMTGKQITYALCGELRRMGEADDSVNRLAMKDKML 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_KLULA (40S ribosomal protein S21 OS=Kluyveromyces lactis GN=RPS21 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.471e-18
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            NDKG+LV+LY+PRKC+ATN+II AKD SSVQ+NIA+VDEE     G+ + Y LSG++R+ G A+  +  L  +DG++
Sbjct:    3 NDKGQLVELYVPRKCSATNRIIKAKDHSSVQINIAQVDEEGRAIPGEYVTYALSGYIRARGEADDSLNRLAQQDGLL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_ASHGO (40S ribosomal protein S21 OS=Ashbya gossypii GN=RPS21 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.590e-18
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            NDKG+LV+LY+PRKC+ATN+II AKD  SVQ+NIA+VDE      G+ I Y LSG+VR+ G A+  +  L  +DG++
Sbjct:    3 NDKGQLVELYVPRKCSATNRIIKAKDHGSVQINIAQVDENGHAVPGEYITYALSGYVRARGEADDSMNRLAQKDGLL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_CANAL (40S ribosomal protein S21 OS=Candida albicans GN=RPS21 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.245e-17
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            NDKG+LV+LY+PRKC+ATN+II AKD +SVQ++IA+VDE+     G+ I Y LSG+VR  G A+  +  L  +DG++
Sbjct:    3 NDKGQLVELYVPRKCSATNRIIKAKDHASVQISIAKVDEDGRAIAGENITYALSGYVRGRGEADDSLNRLAQQDGLL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21B_YEAST (40S ribosomal protein S21-B OS=Saccharomyces cerevisiae GN=RPS21B PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.124e-17
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            NDKG+LV+LY+PRKC+ATN+II A D +SVQ+N+A+VDEE     G+ I Y LSG+VRS G ++  +  L   DG++
Sbjct:    3 NDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYITYALSGYVRSRGESDDSLNRLAQNDGLL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_NEUCR (40S ribosomal protein S21 OS=Neurospora crassa GN=rps-21 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.774e-17
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND+GE+VDLY+PRKC+AT +II +KD  S Q+ IA+VDE      G+ IIY LSGFVR++G ++  +  L  RDG++
Sbjct:    3 NDRGEIVDLYVPRKCSATGRIIKSKDHGSCQITIAKVDENGRAIQGENIIYALSGFVRAMGESDDSLNRLAQRDGLL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21A_YEAST (40S ribosomal protein S21-A OS=Saccharomyces cerevisiae GN=RPS21A PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.774e-17
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            NDKG+LV+LY+PRKC+ATN+II A D +SVQ+N+A+VDEE     G+ + Y LSG+VRS G ++  +  L   DG++
Sbjct:    3 NDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGESDDSLNRLAQNDGLL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_IXOSC (40S ribosomal protein S21 OS=Ixodes scapularis GN=RpS21 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 39/78 (50.00%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVMP 324
            N+ GE VDLYIPRKC+ +N+IIHAKD +S+Q+N+A VDE++GRATG+   Y + G +R +G ++  +  L   DG +P
Sbjct:    3 NEAGEYVDLYIPRKCSTSNRIIHAKDHASIQINLAIVDEQSGRATGETKPYAICGAIRRMGESDDCITRLAKDDGYIP 80          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_SUBDO (40S ribosomal protein S21 OS=Suberites domuncula GN=RPS21 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 39/76 (51.32%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGV 318
            N+ GE VD+YIPRKC+A+ +II A+D ++VQLNIA+VDE+TGR TG    Y +SGF+R++G ++  +  +  RDG+
Sbjct:    3 NEAGETVDVYIPRKCSASGRIIGARDYAAVQLNIADVDEKTGRVTGGFKTYAVSGFIRAMGESDDCLHRICTRDGI 78          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_RAT (40S ribosomal protein S21 OS=Rattus norvegicus GN=Rps21 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY+PRKC+A+N+II AKD +S+Q+N+AEVD  TGR  G+   YG+ G +R +G ++  +  L   DG++
Sbjct:    3 NDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRSTGRFNGQFKTYGICGAIRRMGESDDSILRLAKADGIV 79          
The following BLAST results are available for this feature:
BLAST of CX301066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS21_PECGU1.126e-1854.5540S ribosomal protein S21 OS=Pectinaria gouldii GN... [more]
RS21_KLULA1.471e-1854.5540S ribosomal protein S21 OS=Kluyveromyces lactis ... [more]
RS21_ASHGO5.590e-1854.5540S ribosomal protein S21 OS=Ashbya gossypii GN=RP... [more]
RS21_CANAL1.245e-1753.2540S ribosomal protein S21 OS=Candida albicans GN=R... [more]
RS21B_YEAST2.124e-1753.2540S ribosomal protein S21-B OS=Saccharomyces cerev... [more]
RS21_NEUCR2.774e-1751.9540S ribosomal protein S21 OS=Neurospora crassa GN=... [more]
RS21A_YEAST2.774e-1751.9540S ribosomal protein S21-A OS=Saccharomyces cerev... [more]
RS21_IXOSC6.181e-1750.0040S ribosomal protein S21 OS=Ixodes scapularis GN=... [more]
RS21_SUBDO8.072e-1751.3240S ribosomal protein S21 OS=Suberites domuncula G... [more]
RS21_RAT8.072e-1749.3540S ribosomal protein S21 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08005D03SK PhyRootSw1 Citrus sinensis cDNA clone C08005D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301066 ID=CX301066; Name=CX301066; organism=Citrus sinensis; type=EST; length=487bp
CTCGTGCCGAATTCGGCACGAGGCTTTAAATAAATTATTCATCGATCATA
AATCATGAGCCACCTCAGAAACCAAAGAGAAGGTACTTACAACGATAAGG
GAGAACTCGTCGATCTCTACATCCCCAGAAAGTGCGCTGCTACCAACAAG
ATCATCCACGCTAAGGATAAGTCCTCTGTTCAACTCAACATCGCTGAAGT
CGATGAAGAAACTGGTAGAGCCACCGGCAAGAAGATCATCTACGGTCTTT
CTGGTTTCGTCAGATCCATTGGCAGAGCTAACGCTGAAGTCGAAAACTTG
TTGGCCAGAGATGGTGTTATGCCCTACACTGAATAATTTTGCAGTAAAAA
GAAGACGTGAATGAAGTATATAATGCTGAGTATCGTTTGCATATATTTGT
AACAACTGAATCCCTTCAAACCAGTCCGATACTTTTCTATCAATGTATAG
CTTTGCAAATATAAGACACGAAAAAAAAAAAAAAAAA
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