EY702468

Overview
NameEY702468
Unique NameEY702468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-28
Identity = 71/119 (59.66%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  274 NKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGRRPYVPPY 612
            +KE  D++SV+VGNVDY+ TPEE+Q  F SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R LKV PKRTNVPGM + R R     R     GYRGR     PY
Sbjct:   48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 8.384e-28
Identity = 76/162 (46.91%), Postives = 98/162 (60.49%), Query Frame = 1
Query:  208 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM---------KQYRPRRFNPYMGYRGRRPYVPPYFYSPYGYGKVPRFR 654
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++  F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R  N Y   R R       FYS  G+   PR R
Sbjct:  136 QNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTN-YNSSRSR-------FYS--GFNSRPRGR 287          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 1.095e-27
Identity = 76/162 (46.91%), Postives = 98/162 (60.49%), Query Frame = 1
Query:  208 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK---------QYRPRRFNPYMGYRGRRPYVPPYFYSPYGYGKVPRFR 654
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++  F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R  N Y   R R       FYS  G+   PR R
Sbjct:  140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN-YNSSRSR-------FYS--GFNSRPRGR 291          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 1.095e-27
Identity = 76/162 (46.91%), Postives = 98/162 (60.49%), Query Frame = 1
Query:  208 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK---------QYRPRRFNPYMGYRGRRPYVPPYFYSPYGYGKVPRFR 654
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++  F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R  N Y   R R       FYS  G+   PR R
Sbjct:  140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN-YNSSRSR-------FYS--GFNSRPRGR 291          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.868e-27
Identity = 75/155 (48.39%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  208 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGRRPYVP--PYFYSPYGYGKVPRFR 654
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++  F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R         FYS  GY   PR R
Sbjct:  131 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRARASSYSSRSRFYS--GYTPRPRGR 281          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.439e-27
Identity = 75/155 (48.39%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  208 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGRRPYVP--PYFYSPYGYGKVPRFR 654
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++  F  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R         FYS  GY   PR R
Sbjct:  130 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRARASSYSSRSRFYS--GYTPRPRGR 280          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.098e-27
Identity = 74/155 (47.74%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  208 QAKVEKEMGAAQDPAN---VAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGRRPYVP--PYFYSPYGYGKVPRFR 654
            Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++  F  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R         FYS  GY   PR R
Sbjct:  131 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRARASSYSSRSRFYS--GYTPRPRGR 281          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.676e-25
Identity = 67/160 (41.88%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  208 QAKVEKEM--GAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP----------------------RRFNPYMGYRGRRPYVPPY 612
            Q++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++  F  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+                           R     MGYRGR  Y  PY
Sbjct:   65 QSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.624e-24
Identity = 67/161 (41.61%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  208 QAKVEKEM--GAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK--------QYRPR---------------RFNPYMGYRGRRPYVPPY 612
            Q++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++  F  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+          +R R                     GYRGR  Y  PY
Sbjct:   65 QSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYAPY 225          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.345e-24
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 1
Query:  277 KEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 612
            K+E D RSV+VGNVDY  T ++++  F SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   87 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
The following BLAST results are available for this feature:
BLAST of EY702468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PAB2_SCHPO1.293e-2859.66Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PABP2_MOUSE8.384e-2846.91Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PABP2_HUMAN1.095e-2746.91Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN1.095e-2746.91Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2A_XENLA1.868e-2748.39Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PAB2B_XENLA2.439e-2748.39Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR7.098e-2747.74Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PABP2_DROME8.676e-2541.88Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
PABP2_DROPS5.624e-2441.61Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
EPA2B_XENLA7.345e-2448.74Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-C10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702468 ID=EY702468; Name=EY702468; organism=Citrus sinensis; type=EST; length=874bp
CGACCCACGCGTCCGAGAAGAGAGAGAATGGAGGAAGAAGAGCACGAGGT
TTACGGAGGCGAAATCCCTGACGTGGAAGGTGACATGGACGCTCACAATA
CTGACGTCGACATGTCGGCGGCCGATGACGACGGCGGCGGGGGGCTGGAT
GAGATGAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCG
TGAGATGCAAGCTAAGGTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTG
CTAATGTGGCTGCTAATCAAGCAAACAAAGAAGAGGCAGATTCACGATCA
GTCTTTGTTGGCAATGTAGATTATGCATGCACTCCTGAAGAAGTGCAGCG
AGATTTCCAATCCTGTGGTACTGTAAACAGGGTAACTATTCTGACAGACA
AGTTTGGCCAGCCAAAGGGTTTTGCTTATGTGGAATTCCTTGAAATAGAT
GCTGTTCAAGAGGCTCTCCAGTTGAATGAGTCTGAATTACATGGCCGTCA
ACTGAAGGTTTTGCCTAAGAGGACAAATGTCCCTGGTATGAAGCAGTATC
GTCCAAGGCGTTTCAATCCTTACATGGGGTACCGAGGCAGGAGGCCCTAT
GTACCTCCTTATTTCTATTCACCTTATGGATATGGGAAGGTTCCGAGGTT
CAGAAGGCCAATGAGGTACATGGCCTACTACTAGCAGATTGTGCTCCTGT
TGAAGATGGTGACATTTGTGGATCATCCATAAACTAAAAAATCAATGTAT
CATGGTGCTTTTGGATCCTGCTTTAGATAGGAAACCAAGGATCTATTAGC
TACATGGTTATTATGGATGTCTTGGATGATCCACATCATTAGCATGAACT
TATGGGATTTCTTGGTGACTTGGA
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