CX300866

Overview
NameCX300866
Unique NameCX300866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4964 contig Csv1_Contig4964:1..402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.748e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAIIYNKDH WDDHWIFWVGPFIGAALAALYHQ+VIRAIPFKS
Sbjct:  232 GTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.748e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAIIYNKDH WDDHWIFWVGPFIGAALAALYHQ+VIRAIPFKS
Sbjct:  232 GTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.394e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAIIYNKDH WDDHWIFWVGPFIGAALAALYHQ+VIRAIPFKS
Sbjct:  231 GTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKS 284
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.430e-25
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAIIYNKDH WDDHW+FWVGPFIGAALAALYH VVIRAIPFKS
Sbjct:  231 GTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.430e-25
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAIIYNKDH WDDHW+FWVGPFIGAALAALYH VVIRAIPFKS
Sbjct:  231 GTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAIIYNKDH W+DHWIFWVGPF+GAALAA+YHQV+IRAIPFKS
Sbjct:  234 GTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKS 287
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.413e-25
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAIIYN+DH W+DHWIFWVGPFIGAALAA+YHQV+IRAIPFKS
Sbjct:  234 GTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 287
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.069e-25
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAIIYN+DH W DHWIFWVGPFIGAALAA+YHQV+IRAIPFKS
Sbjct:  237 GTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 290
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 7.069e-25
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAIIYN+ H WDDHWIFWVGPFIGAALAA+YHQVVIRAIPFKS
Sbjct:  233 GTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKS 286
[Close]
BLAST of CX300866 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.984e-24
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 2 
Query:    2 GTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 163
            GTGINPARSLGAAII+NKD+ WDDHW+FWVGPFIGAALAALYH +VIRAIPFKS
Sbjct:  231 GTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKS 284
The following BLAST results are available for this feature:
BLAST of CX300866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PIP15_ARATH3.748e-2696.30Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH3.748e-2696.30Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH6.394e-2696.30Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP11_VICFA2.430e-2594.44Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.430e-2594.44Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP11_ORYSJ3.173e-2590.74Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE5.413e-2590.74Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE7.069e-2590.74Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ7.069e-2592.59Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH5.984e-2488.89Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08003A12SK PhyRootSw1 Citrus sinensis cDNA clone C08003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300866 ID=CX300866; Name=CX300866; organism=Citrus sinensis; type=EST; length=404bp
CGGAACTGGCATCAACCCCGCAAGGAGTCTTGGAGCTGCAATCATCTACA
ACAAGGACCACGGTTGGGATGACCATTGGATTTTCTGGGTGGGACCATTC
ATTGGAGCAGCACTTGCAGCTTTGTACCACCAGGTTGTGATCAGAGCCAT
TCCCTTCAAATCAAGCTGATGGTCTTATGAACGGTCGTGATTGCTGATGC
ATTTGTTTATGGCTGTCGTTGGTGGTTCTGTTTTATATTTTCGATTATCC
CAAGTCCATGCATTTTCGGTTCGTTAAATTTTCTGGTTGTTTGGTCTTGT
GTATGAATTTTCTGTAATGCCTATGCACAAAGAAGCCGCTGATACTGGCC
AAAGTTGGCACCGGTAGTACCAGCATTTGTAATTTAAAAAAAAAAAAAAA
AAAA
back to top