CX300751

Overview
NameCX300751
Unique NameCX300751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.037e-47
Identity = 88/100 (88.00%), Postives = 96/100 (96.00%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGMRYFHKLRNKF CPIVN+DKLWS+VP+DVKAK+SKDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   47 KYHPGYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 6.765e-47
Identity = 87/100 (87.00%), Postives = 96/100 (96.00%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGMRYFHKLRNKF CPIVN+DKLWS+VP+DVKAK++KDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   47 KYHPGYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_OSCBR (60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.159e-30
Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 1
Query:   19 RGKYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            R KYHPGYFGKVGMR FH  +N  +CP VN+D+LW++VP++ K K S +  P+ID  + GYFKVLGKG+LP+ QP++VKAK  S  AE KIK AGGA +L A
Sbjct:   45 RDKYHPGYFGKVGMRVFHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPLIVKAKFFSHEAENKIKAAGGACILVA 145          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.978e-30
Identity = 59/103 (57.28%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGK+GMR+FH LRN++HCP V+++K+W++VP+ V+   +  N    P++DVTQ G+FKVLG G+LP  QP++VKA+  SK AEKKIK  GGA +L A
Sbjct:   47 KYHPGYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-TQPIIVKARYFSKVAEKKIKAVGGACILVA 148          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_TETTH (60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.405e-30
Identity = 65/102 (63.73%), Postives = 79/102 (77.45%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKD--NVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            K+HPGY+GK+GMR FH  +N  HCP+VNIDKLWS+V    + K ++D   VP+IDVT+ G+FKVLGKG LP NQPVVVKAK  SKTAE++I   GGA VLTA
Sbjct:   49 KWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP-NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 4.123e-28
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGMR++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   47 KYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_MACFA (60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.123e-28
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGMR++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   47 KYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 4.123e-28
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGMR++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   47 KYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 5.385e-28
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGM+++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   47 KYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.385e-28
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGM+++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   47 KYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
The following BLAST results are available for this feature:
BLAST of CX300751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
R27A2_ARATH3.037e-4788.0060S ribosomal protein L27a-2 OS=Arabidopsis thalia... [more]
R27A3_ARATH6.765e-4787.0060S ribosomal protein L27a-3 OS=Arabidopsis thalia... [more]
RL27A_OSCBR1.159e-3059.8060S ribosomal protein L27a OS=Oscheius brevesophag... [more]
RL27A_DICDI1.978e-3057.2860S ribosomal protein L27a OS=Dictyostelium discoi... [more]
RL27A_TETTH4.405e-3063.7360S ribosomal protein L27a OS=Tetrahymena thermoph... [more]
RL27A_RAT4.123e-2858.2560S ribosomal protein L27a OS=Rattus norvegicus GN... [more]
RL27A_MACFA4.123e-2858.2560S ribosomal protein L27a OS=Macaca fascicularis ... [more]
RL27A_BOVIN4.123e-2858.2560S ribosomal protein L27a OS=Bos taurus GN=RPL27A... [more]
RL27A_PONAB5.385e-2857.2860S ribosomal protein L27a OS=Pongo abelii GN=RPL2... [more]
RL27A_HUMAN5.385e-2857.2860S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]

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Properties
Property NameValue
Genbank descriptionC08001H01SK PhyRootSw1 Citrus sinensis cDNA clone C08001H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300751 ID=CX300751; Name=CX300751; organism=Citrus sinensis; type=EST; length=521bp
CTCGTGCCGAATTCGGCACGAGGCAAGTACCATCCGGGTTATTTTGGTAA
AGTCGGTATGAGGTACTTCCACAAACTCCGCAACAAATTCCACTGCCCCA
TCGTCAACATCGACAAGCTCTGGTCCATGGTCCCACAAGATGTGAAAGCA
AAGGCCAGCAAGGACAATGTTCCGATGATTGATGTCACTCAGTTCGGCTA
CTTTAAGGTTTTGGGCAAAGGTGTTTTGCCGGAGAACCAGCCCGTCGTTG
TCAAGGCCAAGCTCGTTTCTAAGACCGCTGAGAAGAAGATCAAAGAGGCT
GGTGGCGCTGTTGTGCTCACAGCTTAGGGTTATTTTGGTAACTCTCCCTT
GTCTAGGGATTTTGTTTTATTCTGGGATCTGTTGAGACTTATTTAAATCA
CAATGTTTTTATCTTTTTTTTTGGGTATATCTCTCGCTTAATGATTAAAT
GTGACCTGAATCTCATTTTATTTGACTTCTTGGTGCATTTAAGCAGTTTT
TTATAAAAAAAAAAAAAAAAA
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