CX078583

Overview
NameCX078583
Unique NameCX078583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4960 contig Csv1_Contig4960:387..1187. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078583 vs. ExPASy Swiss-Prot
Match: SCL6_ARATH (Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SLC6 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.377e-49
Identity = 95/162 (58.64%), Postives = 121/162 (74.69%), Query Frame = -2
Query:  318 VNLPIGTFCNYPATFXSVLCFVKQLKPKIVVSLDRGCDRTDVPFPHHMIHALQSYSCLLESLDAVNVNLDALQKIERFLVYPCIEKIVLGRHHSPER-LPPWKSLFMQSGFAPLTFSNFTESQADCLVQRTPVKGFHVEKRQSSLALCWQRKELILATAWRC 800
            VN+   +F + P     VL FVK L P I+V  DRGC+RTD+PF   + H+L S++ L ESLDAVN NLDA+QKIERFL+ P IEK+VL R    ER +  W+++F+Q GF+P+T SNFTESQA+CLVQRTPV+GFHVEK+ +SL LCWQR EL+  +AWRC
Sbjct:  398 VNISAASFSHLPL----VLRFVKHLSPTIIVCSDRGCERTDLPFSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC 555          
BLAST of CX078583 vs. ExPASy Swiss-Prot
Match: SCL27_ARATH (Scarecrow-like protein 27 OS=Arabidopsis thaliana GN=SCL27 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.541e-45
Identity = 90/161 (55.90%), Postives = 114/161 (70.81%), Query Frame = -2
Query:  318 VNLPIGTFCNYPATFXSVLCFVKQLKPKIVVSLDRGCDRTDVPFPHHMIHALQSYSCLLESLDAVNVNLDALQKIERFLVYPCIEKIVLGRHHSPERLPPWKSLFMQSGFAPLTFSNFTESQADCLVQRTPVKGFHVEKRQSSLALCWQRKELILATAWRC 800
            VNLP+ +  +       +L F+KQL P IVV  DRGCDR D PFP+ +IH+LQ ++ LLESLDA N N D    IERF V P IEK+++ RH   ER PPW+ LF Q GF+P + S   E+QA+CL+QR PV+GFHVEKRQSSL +CWQRKEL+  +AW+C
Sbjct:  484 VNLPVNSVAS--GYLPLILRFLKQLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDA-NQNQDD-SSIERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPASLSQMAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWKC 640          
BLAST of CX078583 vs. ExPASy Swiss-Prot
Match: SCL22_ARATH (Scarecrow-like protein 22 OS=Arabidopsis thaliana GN=SCL22 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.177e-40
Identity = 86/166 (51.81%), Postives = 114/166 (68.67%), Query Frame = -2
Query:  318 VNLPIGTFCNYPATFXSVLCFVKQLKPKIVVSLDRGCDRT-DVPFPHHMIHALQSYSCLLESLDAVNVN-LDALQKIERFLVYPCIEKIVLGRHHSPERLPPWKSLFMQSGFAPLTFSNFTESQADCLVQRTPVKGFHVEKRQS---SLALCWQRKELILATAWRC 800
            VNLPI +  +       +L F+KQ+ P +VV  DR CDR  D PFP+ +I+ALQ Y+ LLESLD+ N+N  +A   IERF V P I+K++  R+   ER PPW+SLF Q GF P+T S   E+QA+ L+QR P++GFH+EKRQS   SL LCWQRKEL+  +AW+C
Sbjct:  460 VNLPISSMVS--GYLPLILRFLKQISPNVVVCSDRSCDRNNDAPFPNGVINALQYYTSLLESLDSGNLNNAEAATSIERFCVQPSIQKLLTNRYRWMERSPPWRSLFGQCGFTPVTLSQTAETQAEYLLQRNPMRGFHLEKRQSSSPSLVLCWQRKELVTVSAWKC 623          
BLAST of CX078583 vs. ExPASy Swiss-Prot
Match: SCL15_ARATH (Scarecrow-like protein 15 OS=Arabidopsis thaliana GN=SCL15 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.590e-17
Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = -2
Query:  321 VKQLKPKIVVSLDRGCDRTDVP----FPHHMIHALQSYSCLLESLDAVNVNLDALQKI-ERFLVYPCIEKIV---LGRHHSPERLPPWKSLFMQSGFAPLTFSNFTESQADCLVQRTPVKGFHVEKRQSSLALCWQRKELILATAWR 737
            ++++ PK+VV +D     T++     F    + AL+ Y+ +LESLDA     D ++KI E F++ P I   V     R H+ E    W+  F  +G  P+  S F + QA+CL+++  V+GFHV KRQ  L LCW  + L+  +AWR
Sbjct:  342 LRRVSPKVVVFVDSE-GWTEIAGSGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKIVEAFVLRPKISAAVETAADRRHTGEMT--WREAFCAAGMRPIQQSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 485          
The following BLAST results are available for this feature:
BLAST of CX078583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SCL6_ARATH4.377e-4958.64Scarecrow-like protein 6 OS=Arabidopsis thaliana G... [more]
SCL27_ARATH6.541e-4555.90Scarecrow-like protein 27 OS=Arabidopsis thaliana ... [more]
SCL22_ARATH2.177e-4051.81Scarecrow-like protein 22 OS=Arabidopsis thaliana ... [more]
SCL15_ARATH2.590e-1736.05Scarecrow-like protein 15 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_9H10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H10-O19-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078583 ID=CX078583; Name=CX078583; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTGAAGGTCAAATTCTTCTTTGTTCCACGTCTTGTTTCCTTCAT
GTCAAGTTACAAGAATATTTAGCACCCTCAACAAGAAAATGAACAATTTA
AGTTTAACCCACAACCATGTCAAGGAACAGAAACAAGAAAGAATGTACTA
AACCATGCATCAACAGCTACGAAAATGTTTTGTTTGTTGATTGGACAATA
AACCTAAAGCTCATAGACAATTAGCATAAGAGACCAAAAACAAGAAAAGT
CAAAATAATCATAAACCAAAGCTGTTGTTAGGCACCTTTGCAACCAATAT
CCTGCAGCCACTCCTTAGCACCTCCAAGCAGTAGCCAAGATAAGCTCTTT
CCGCTGCCAGCAGAGAGCGAGCGAGGACTGTCTCTTCTCAACATGGAAAC
CCTTAACTGGAGTCCGTTGCACCAAACAGTCAGCCTGGGACTCAGTGAAG
TTACTAAATGTCAATGGAGCAAACCCAGATTGCATAAACAGACTCTTCCA
AGGAGGCAATCTCTCAGGAGAATGGTGGCGTCCTAATACAATTTTTTCAA
TACAAGGATAAACCAAAAACCTCTCAATCTTTTGCAAGGCATCCAAATTC
ACATTCACAGCATCCAGCGATTCAAGTAGGCAGGAGTATGACTGAAGTGC
GTGAATCATATGGTGAGGAAATGGAACATCTGTTCGATCACAGCCTCTAT
CTAAAGAAACAACAATCTTGGGTTTAAGTTGCTTTACAAAGCAAAGCACC
GAANGAAAGGTTGCTGGGTAATTACAGAAGGTGCCAATTGGGAGATTCAC
A
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