CX078550

Overview
NameCX078550
Unique NameCX078550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8420 contig Csv1_Contig8420:570..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI2_TOBAC (Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.673e-35
Identity = 77/104 (74.04%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  116 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGEEVVA 427
            VKLQSILMPL +FDHAE GDALY ME               LH VA +NNDVQLADFVESKYL EQVEAIK ISEYVAQLRRVG+GHGVWHFDQMLL  EEVVA
Sbjct:  156 VKLQSILMPLSEFDHAEEGDALYAMELALSLAKLTNQKLLNLHAVATRNNDVQLADFVESKYLREQVEAIKMISEYVAQLRRVGKGHGVWHFDQMLLQEEEVVA 259          
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI3_SOYBN (Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.041e-34
Identity = 73/104 (70.19%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  116 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGEEVVA 427
            VKLQSI+MPL +FDH E GDALY ME               LH VA+KNNDVQLADF+ES++L EQVEAIKKISEYVAQLRRVG+GHGVWHFDQMLLH E V A
Sbjct:  153 VKLQSIVMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVQLADFIESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVAA 256          
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI4_SOYBN (Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.612e-32
Identity = 69/98 (70.41%), Postives = 76/98 (77.55%), Query Frame = -3
Query:  134 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 427
            VKLQSI+MPL DFDHA+ GDAL+ ME               LH VA KN DVQLADFVE++YL EQVEAIK+ISEYVAQLRRVG+GHGVWHFDQMLLH
Sbjct:  144 VKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQMLLH 241          
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI2_VIGUN (Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 3.058e-31
Identity = 67/98 (68.37%), Postives = 76/98 (77.55%), Query Frame = -3
Query:  134 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 427
            VKLQSI+MPL +FDHA+ GDAL+ ME               LH VA KN DVQLADFVES++L EQVE+IK+ISEYVAQLRRVG+GHGVWHFDQMLLH
Sbjct:  147 VKLQSIVMPLSEFDHADKGDALHAMELALSLEKLTNEKLLHLHSVATKNGDVQLADFVESEFLGEQVESIKRISEYVAQLRRVGKGHGVWHFDQMLLH 244          
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI2_ARATH (Ferritin-2, chloroplastic OS=Arabidopsis thaliana GN=FER2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.838e-30
Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = -3
Query:  128 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGE 427
            VKLQSILMP+ +FDH E GDAL+ ME               L  V  KNNDVQL DFVES++L EQVEAIKKISEYVAQLRR+G+GHGVWHFDQMLL+ E
Sbjct:  153 VKLQSILMPVSEFDHEEKGDALHAMELALSLEKLTNEKLLKLQSVGVKNNDVQLVDFVESEFLGEQVEAIKKISEYVAQLRRIGKGHGVWHFDQMLLNDE 252          
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI4_ARATH (Ferritin-4, chloroplastic OS=Arabidopsis thaliana GN=FER4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.678e-29
Identity = 64/99 (64.65%), Postives = 74/99 (74.75%), Query Frame = -3
Query:  131 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHG 427
            VKLQSI+MPL +F+H + GDALY ME               LH VA+KNNDV LADF+ES++L EQVEAIK ISEYVAQLRRVG+GHG WHF+QMLL G
Sbjct:  161 VKLQSIVMPLSEFEHVDKGDALYGMELALSLEKLVNEKLLNLHSVASKNNDVHLADFIESEFLTEQVEAIKLISEYVAQLRRVGKGHGTWHFNQMLLEG 259          
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI1_ARATH (Ferritin-1, chloroplastic OS=Arabidopsis thaliana GN=FER1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.050e-28
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = -3
Query:  134 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 427
            VKL  I+ P+ +F+HAE GDALY ME               +HKVA++NND QLADFVES++L EQ+EAIKKIS+Y+ QLR +G+GHGVWHFDQMLL+
Sbjct:  158 VKLHPIVSPISEFEHAEKGDALYAMELALSLEKLTNEKLLNVHKVASENNDPQLADFVESEFLGEQIEAIKKISDYITQLRMIGKGHGVWHFDQMLLN 255          
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI3_ARATH (Ferritin-3, chloroplastic OS=Arabidopsis thaliana GN=FER3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.571e-27
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = -3
Query:  137 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLL 427
            VKLQ +++P  +FDH E GDALY ME               LH VA+KN+DVQLADF+ES +L+EQVEAIKKISEYV+QLRR+G+GHG WHFDQ LL
Sbjct:  159 VKLQPMVLPQSEFDHPEKGDALYAMELALSLEKLVNEKLLNLHSVASKNDDVQLADFIESVFLNEQVEAIKKISEYVSQLRRLGKGHGTWHFDQELL 255          
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI1_TOBAC (Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=FER1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.968e-27
Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = -3
Query:  134 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 427
            VKL SI  P  +FDH E GDALY ME               LH VA+++NDV LADF+ES++L EQV+AIKKISEYVAQLRRVGQGHGVW FDQMLL+
Sbjct:  149 VKLLSICAPPTEFDHCEKGDALYAMELALCLEKLTNQRLLNLHAVASRSNDVHLADFLESEFLVEQVDAIKKISEYVAQLRRVGQGHGVWQFDQMLLN 246          
BLAST of CX078550 vs. ExPASy Swiss-Prot
Match: FRI1_BRANA (Ferritin-1, chloroplastic OS=Brassica napus GN=LSC30 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.968e-27
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = -3
Query:  134 VKLQSILMPLFDFDHAENGDALYPMEXXXXXXXXXXXXXXXLHKVANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 427
            V L  I+ P+ DF+HAE GDALY ME               LH+VA++NND QLADFVES++L EQ+EAIKKIS+++ QLR VG+GHGVWHFDQMLL+
Sbjct:  157 VTLHPIVSPISDFEHAEKGDALYAMELALSLEKLTNEKLLNLHRVASENNDPQLADFVESEFLGEQIEAIKKISDFITQLRMVGKGHGVWHFDQMLLN 254          
The following BLAST results are available for this feature:
BLAST of CX078550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
FRI2_TOBAC2.673e-3574.04Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=... [more]
FRI3_SOYBN5.041e-3470.19Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI4_SOYBN3.612e-3270.41Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2[more]
FRI2_VIGUN3.058e-3168.37Ferritin-2, chloroplastic OS=Vigna unguiculata GN=... [more]
FRI2_ARATH9.838e-3066.00Ferritin-2, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI4_ARATH1.678e-2964.65Ferritin-4, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI1_ARATH7.050e-2859.18Ferritin-1, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI3_ARATH1.571e-2761.86Ferritin-3, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI1_TOBAC5.968e-2763.27Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=... [more]
FRI1_BRANA5.968e-2759.18Ferritin-1, chloroplastic OS=Brassica napus GN=LSC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9G01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9G01-M1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078550 ID=CX078550; Name=CX078550; organism=Citrus sinensis; type=EST; length=429bp
TTTTTTTTTTTGCATGCCCGAAAGTTTCTAAATTAAGAACTAGTGAACAA
AAACAACATAAATATCAAGCCTTAGTAGGGATAGTCAGGTGACAAGCAAG
ATGTGTCCACCATCATGCGACAACTTCCTCCCCATGGAGCAGCATTTGAT
CAAAGTGCCAGACACCATGCCCCTGGCCAACTCTTCTCAGCTGAGCAACA
TATTCAGATATCTTTTTGATGGCTTCTACCTGCTCGTGTAAATACTTGCT
TTCAACGAAATCTGCCAACTGCACATCATTGTTCTTGTTGGCCACCTTGT
GCAAGTTGAGGAGTTTCTCATTTGTTAGCTTCTCCAGAGACAGCGTAAGC
TCCATGGGATACAAAGCATCTCCGTTCTCAGCATGATCAAAGTCAAAGAG
AGGCATCAATATTGATTGGAGCTTCACTT
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