CX078527

Overview
NameCX078527
Unique NameCX078527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078527 vs. ExPASy Swiss-Prot
Match: BAT43_CAEEL (BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 40/140 (28.57%), Postives = 74/140 (52.86%), Query Frame = -3
Query:  216 EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAALKDSPMKQ 635
            +ES +    + D+  + +R  + Y+YT +    EQ+A  L+  A+KYQ+  LK  CE+ L  +L  DN+ +    A  ++A QL   +++ I  N +++   E + +LV   P+L+ E++ A  ++Q     L   P K+
Sbjct:  305 QESDTNMTTVDDIEPEVMRELLVYMYTGQTKYIEQMAQSLIAAADKYQLDRLKVMCEQALCYQLTTDNASLTLMLADMYSASQLRAHSINFINVNANEVMDTEGWEDLVRDHPKLLEEVFRALATQQTPPVVLVQPPKKR 444          
BLAST of CX078527 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  255 EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 635
            EES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  234 EESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX078527 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  255 EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 635
            EES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  234 EESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX078527 vs. ExPASy Swiss-Prot
Match: SPOPA_XENLA (Speckle-type POZ protein A OS=Xenopus laevis GN=spop-A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  255 EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 635
            EES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  234 EESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX078527 vs. ExPASy Swiss-Prot
Match: SPOP_PONAB (Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  255 EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 635
            EES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  234 EESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX078527 vs. ExPASy Swiss-Prot
Match: SPOP_MOUSE (Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  255 EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 635
            EES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  234 EESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX078527 vs. ExPASy Swiss-Prot
Match: SPOP_HUMAN (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  255 EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 635
            EES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  234 EESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX078527 vs. ExPASy Swiss-Prot
Match: SPOP_BOVIN (Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 39/127 (30.71%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  255 EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 635
            EES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  234 EESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQ 360          
BLAST of CX078527 vs. ExPASy Swiss-Prot
Match: SPOP_DANRE (Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 38/127 (29.92%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  255 EESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQ 635
            EES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L + L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P LV E Y +  S Q
Sbjct:  234 EESKKNRVEINDVEAEVFKEMMFFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCTSLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVASHPHLVAEAYRSLASAQ 360          
The following BLAST results are available for this feature:
BLAST of CX078527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BAT43_CAEEL3.035e-1428.57BTB and MATH domain-containing protein 43 OS=Caeno... [more]
SPOP_XENTR9.764e-1331.50Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA9.764e-1331.50Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]
SPOPA_XENLA9.764e-1331.50Speckle-type POZ protein A OS=Xenopus laevis GN=sp... [more]
SPOP_PONAB6.329e-1230.71Speckle-type POZ protein OS=Pongo abelii GN=SPOP P... [more]
SPOP_MOUSE6.329e-1230.71Speckle-type POZ protein OS=Mus musculus GN=Spop P... [more]
SPOP_HUMAN6.329e-1230.71Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]
SPOP_BOVIN6.329e-1230.71Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=... [more]
SPOP_DANRE8.266e-1229.92Speckle-type POZ protein OS=Danio rerio GN=spop PE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_9F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9F02-K3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078527 ID=CX078527; Name=CX078527; organism=Citrus sinensis; type=EST; length=637bp
TTTAATATTCCATGAAATGTCAGCATTTTCAAGTTTTGCTACCAATAGCA
TAGCAGCCATCACAGATATTGTTTTCATCTTCAAACTTCAACATATCCCT
TGGAGTGAAGACAAAGCACTACATTAGATATCGAACACTGATCAATGACT
CATCTCCCATTCTAAAATAATACAGGGCTTGCCTCAGATCTGATCAGCAC
AACCTTACACACCTATTGCTTCATTGGAGAATCCTTAAGGGCTGCAGTAT
TCACTTGCTTGGAAAGGTAAGCTTCATAGATTTCCACTACAAGTCGGGGA
TCCTTCTCCACGAGCTCCCTATACTCCTCGCACTTGGTAAGCTTGTCCAT
GTTGTCCGTGATCAATGACAATGCTGCTTCAAGCAACTGCTTTGCATTGT
GCTGGTGCGCAAAAGCATAGTTCACAACAGAATTGTCCCAATTCAGTTTG
GATACCAGGAACTTCTCACAGTATGCTTTAAGGTGCTTCACCTGATATTT
TTCAGCCAACTCCAAAAGGTCACAGGCCAATTGCTCATCAAGGCAAGCTT
CTGCAGTATACAAATAATTGACAAATGCACGAAGGGCATCATATGATACA
TCACTGATCTTTATAGTGCCACTCCGACTTTCTTCCT
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