CX078502

Overview
NameCX078502
Unique NameCX078502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8965 contig Csv1_Contig8965:20..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078502 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 44/65 (67.69%), Postives = 46/65 (70.77%), Query Frame = -3
Query:  520 GLEKIENLQSHDNTEIYEKAVKILETYWV--XXXXXXXXXXXDATQAGFGFAGNGLPVPSGGFNF 708
            GLEKIENLQSHDN EIYEKAVKILETYW+             D +QAGF F GN  PVPSGGFNF
Sbjct:  467 GLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF 531          
BLAST of CX078502 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 40/64 (62.50%), Postives = 44/64 (68.75%), Query Frame = -3
Query:  517 GLEKIENLQSHDNTEIYEKAVKILETYWVXXXXXXXXXXXDATQAGFGFAGNGLPVPSGGFNFG 708
            GLEKIENLQSHDNTEIYEKAVK+LE+YW+           +A Q GF F      VPSGGFNFG
Sbjct:  472 GLEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNA-QNGFNFGNQQPNVPSGGFNFG 534          
BLAST of CX078502 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = -3
Query:  520 GLEKIENLQSHDNTEIYEKAVKILETYWVXXXXXXXXXXXDATQAGFGFAGNGLPVPSGGFNF 708
            GLEKIENLQSHDNTEIYEKAVKILETYW+              +  F F G  + +PSGGFNF
Sbjct:  468 GLEKIENLQSHDNTEIYEKAVKILETYWL----EEEDVPVSLNEDQFEFGGADISLPSGGFNF 526          
BLAST of CX078502 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 35/63 (55.56%), Postives = 39/63 (61.90%), Query Frame = -3
Query:  520 GLEKIENLQSHDNTEIYEKAVKILETYWVXXXXXXXXXXXDATQAGFGFAGNGLPVPSGGFNF 708
            GLEKIENLQSHDN +IY+KAVKILET+W             A Q+GF F      VP G FNF
Sbjct:  470 GLEKIENLQSHDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530          
The following BLAST results are available for this feature:
BLAST of CX078502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IMA1_ARATH8.938e-1667.69Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1B_ORYSJ1.427e-1362.50Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA_SOLLC1.208e-1260.32Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA2_ARATH5.076e-1155.56Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_9E01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9E01-I1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078502 ID=CX078502; Name=CX078502; organism=Citrus sinensis; type=EST; length=710bp
TACCGAAACAATACAATACACTTCATTAATCCTAGTATATTTTGCATAAT
ACACAACCAAAATTCCTTCTTCAAACTAAAAAATATGCTTATCTTGGTCA
AATACAAAATCATGCCAGCACTAAGAAAGAAAAGAAGAAGAAAACACCTC
TAAGAGAACAGAAATATATCTATTTTCTGTCATTGCTCTTAGTCATAAAC
CAGTAAACAGCACAAGTTTAAATCGGCAGCAGCATGCCCCACTCTTGCTT
TCAGGAACTAGGACACTGAAAAAAAAAAGACTACTAAAAGAAAACGAAAA
GAGACTATACTGTGTAATTTCCCCATCTTTGTTCACCACTCTTTTACTTG
ACCCTTGAAAATGACACATTACTCAGCCTATCTTCAACCAATTTTGAATC
TGGACCAAAACTAGATCAAAGAACAGCAAAAGGAGCCTCCCCCCACATGA
AATTGATGATCATAGACACCAGACCTGGACTCTGAACTTCATTCCACATC
CAATTGTTTTCCTTCAACCAAAGTTGAATCCACCAGATGGAACAGGAAGT
CCATTGCCTGCAAAGCCAAATCCAGCTTGGGTAGCATCACCTGGGGGTAA
AGGCTCGTCTTCATCCTCCTCCACCCAATATGTCTCAAGAATCTTCACTG
CCTTCTCGTATATCTCAGTGTTGTCATGACTCTGAAGGTTTTCAATCTTT
TCCAACCCCT
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