EY702430

Overview
NameEY702430
Unique NameEY702430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702430 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.360e-26
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  150 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 575
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  +++ Y EAL L + L++
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155          

HSP 2 Score: 39.6614 bits (91), Expect = 2.360e-26
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 2
Query:  659 PKGKGCPHSSEDSCKCYICATRLTGTIDLQSGNLH-AEEKDYKTAIAISLKA 811
            PK +    S+  +     C  +L  T+D+QSG +H AEEKD+KTA +   +A
Sbjct:  184 PKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEA 235          
BLAST of EY702430 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.360e-26
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  150 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 575
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  +++ Y EAL L + L++
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155          

HSP 2 Score: 39.6614 bits (91), Expect = 2.360e-26
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 2
Query:  659 PKGKGCPHSSEDSCKCYICATRLTGTIDLQSGNLH-AEEKDYKTAIAISLKA 811
            PK +    S+  +     C  +L  T+D+QSG +H AEEKD+KTA +   +A
Sbjct:  184 PKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEA 235          
BLAST of EY702430 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.360e-26
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  150 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 575
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  +++ Y EAL L + L++
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155          

HSP 2 Score: 39.6614 bits (91), Expect = 2.360e-26
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 2
Query:  659 PKGKGCPHSSEDSCKCYICATRLTGTIDLQSGNLH-AEEKDYKTAIAISLKA 811
            PK +    S+  +     C  +L  T+D+QSG +H AEEKD+KTA +   +A
Sbjct:  184 PKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEA 235          
BLAST of EY702430 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.083e-24
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  156 AKEASNPSDAISMLYRVLDDPSSSSEAL-RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLV 572
            A ++++   AI +   VL+   S  E +   +E A+T LSDL  +ENR  DL  L+ Q RP  +   KAK+AKIVR +ID  +    +  LQI +  + ++W   EKRTFLRQ +E +L +L  ++  YT+A+ L+ +L+
Sbjct:   13 AVKSNDIEKAIDLYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDAINLINTLL 152          

HSP 2 Score: 42.3578 bits (98), Expect = 2.083e-24
Identity = 21/59 (35.59%), Postives = 32/59 (54.24%), Query Frame = 2
Query:  647 IKKPPKGKGCPHSSEDSCKCYICATRLTGTIDLQSGNLHAEEKDYKTAIAISLKALRLF 823
            I+  PK +    +++ S     C   L G +DLQSG LHA++ D+KTA +   +A   F
Sbjct:  178 IRNIPKARASLTAAKTSANAVYCPPMLQGNLDLQSGILHADDMDFKTAYSYFYEAYEGF 236          
BLAST of EY702430 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.924e-24
Identity = 52/143 (36.36%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  153 QAKEASNPSD---AISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLV 572
            Q +E  N  D   AI    ++L    S  +   +KE AI  L+ L  +  +   L  LL  +RPFF  I K KT KIVR  ID  + +P      I   KE +QW +   R +LRQR+E +L  L+ E+++Y  AL+ LT+L+
Sbjct:    6 QLEEIGNCQDSNKAIQDYNKILTIQESPDD---IKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLL 145          

HSP 2 Score: 45.4394 bits (106), Expect = 9.924e-24
Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 2
Query:  647 IKKPPKGKGCPHSSEDSCKCYICATRLTGTIDLQSGNLHAEEKDYKTAIA 796
            +K  PK +    S+  +     C  +L   ID+QSG LH+EEKDYKTA +
Sbjct:  171 LKNIPKARAALTSARTNANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFS 220          

HSP 3 Score: 23.0978 bits (48), Expect = 9.924e-24
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  781 QNCYSYFFESIEAFHALK 834
            +  +SYFFES E + +L+
Sbjct:  216 KTAFSYFFESYETYDSLE 233          
BLAST of EY702430 vs. ExPASy Swiss-Prot
Match: RPN6_YEAST (26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae GN=RPN6 PE=1 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 1.850e-13
Identity = 34/143 (23.78%), Postives = 70/143 (48.95%), Query Frame = 3
Query:  177 SDAISMLYRVLDDPSSSSEAL----------RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 575
            ++A  +   +LD  SS S A             +E +I EL  L         L   +     +     K+KT K+++ +I+   ++P + + QI +C++ +++ + EKR FL+  +  +LA L  + ++Y ++L L+  L++
Sbjct:   21 NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163          

HSP 2 Score: 37.7354 bits (86), Expect = 1.850e-13
Identity = 17/45 (37.78%), Postives = 24/45 (53.33%), Query Frame = 2
Query:  662 KGKGCPHSSEDSCKCYICATRLTGTIDLQSGNLHAEEKDYKTAIA 796
            K K    ++  +     C T+    +DL SG LH E+KDYKTA +
Sbjct:  193 KSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237          
The following BLAST results are available for this feature:
BLAST of EY702430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSD11_MOUSE2.360e-2636.8126S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_HUMAN2.360e-2636.8126S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_BOVIN2.360e-2636.8126S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_SCHPO2.083e-2437.86Probable 26S proteasome regulatory subunit rpn6 OS... [more]
PSD11_DICDI9.924e-2436.3626S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_YEAST1.850e-1323.7826S proteasome regulatory subunit RPN6 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-H04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702430 ID=EY702430; Name=EY702430; organism=Citrus sinensis; type=EST; length=898bp
CCACGCGTCCGCTCCTCACTGCTTGTTGAGTTTCGGTTCAGAAACCCTAA
TCTCCGCACTCATCTTCTCTGTCTCTCTTCGACCGGAGTTGAATATTCCT
GATTGAAATCATGTCTTCATCATATCTTCCTGCAACAACAGACTCTATTG
CGCAGGCTAAAGAAGCCAGTAATCCATCCGATGCTATATCTATGCTTTAC
CGTGTACTTGACGACCCTTCTTCCTCTTCAGAAGCTCTCCGTGTAAAAGA
ATTGGCTATCACAGAACTATCTGACCTTCTTAGACAGGAGAACCGGGCTC
AGGATCTTTGCAACCTTCTTACTCAGTTGAGACCCTTCTTTTCATTGATC
CCTAAGGCTAAAACTGCTAAAATTGTAAGAGGAATTATTGATGCTGTTGC
CAAGATACCTGGGACATCTGAACTCCAAATTGCTCTATGCAAAGAAATGG
TACAATGGACCCGTGCGGAAAAGCGTACATTTCTTAGGCAACGAGTTGAG
GCTAGGCTTGCAGCTCTTTTGATGGAGAGTAGGGAGTACACAGAGGCATT
GACCCTGCTTACTAGCTTGGTCAAAGAGGTGAGGAGATTAGATGACAAAC
TCCTTCTTGTAGACATAGACTTGTTGGAAAGTAAGCTACATTTTTCATTA
AGAAACCTCCCAAAGGCAAAGGCTGCCCTCACAGCAGCGAGGACAGCTGC
AAATGCTATATATGTGCCACCCGGCTCACAGGCACTATAGATTTGCAGAG
CGGAAATTTACATGCTGAAGAGAAGGATTACAAAACTGCTATAGCTATTT
CTTTGAAAGCATTGAGGCTTTTCATGCTCTGAAGACCCAGGGGCTGTTTA
GTCTAAAAACATGNTGCTTTGCAGATCATGGTGAGCCAGCTGATGATG
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