EY702426

Overview
NameEY702426
Unique NameEY702426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:133..935. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_CITSI (Photosystem II reaction center protein K OS=Citrus sinensis GN=psbK PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.056e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_VITVI (Photosystem II reaction center protein K OS=Vitis vinifera GN=psbK PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.367e-24
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL+ ICLNSALYSS+F FAKLPEAYAFLNPIVDVMPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSNFFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_JASNU (Photosystem II reaction center protein K OS=Jasminum nudiflorum GN=psbK PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.367e-24
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL+ ICLNSALYSSSF F KLPEAYAFLNPIVDVMPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLISICLNSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_MORIN (Photosystem II reaction center protein K OS=Morus indica GN=psbK PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.864e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL+ ICLNS LYSSSF  AKLPEAYAFLNPIVDVMPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSVLYSSSFFVAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_GOSHI (Photosystem II reaction center protein K OS=Gossypium hirsutum GN=psbK PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.435e-23
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD MPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_GOSBA (Photosystem II reaction center protein K OS=Gossypium barbadense GN=psbK PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.435e-23
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD MPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_PANGI (Photosystem II reaction center protein K OS=Panax ginseng GN=psbK PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.153e-23
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL+ ICLNSALYSSS  FAKLPEAYAFLNPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_COFAR (Photosystem II reaction center protein K OS=Coffea arabica GN=psbK PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.153e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL++ICLNSALYSS F F KLPEAYAFLNPI+D MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLIWICLNSALYSSGFFFGKLPEAYAFLNPIIDFMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_PHAAO (Photosystem II reaction center protein K OS=Phalaenopsis aphrodite subsp. formosana GN=psbK PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.424e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIF L+ ICLNS LYSSSF FAKLPEAYAF NPI+DVMP+IP LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFCLICICLNSTLYSSSFFFAKLPEAYAFFNPIIDVMPIIPVLFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_LIRTU (Photosystem II reaction center protein K OS=Liriodendron tulipifera GN=psbK PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.251e-23
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL+ IC+NSAL+SSSF FAKLPEAYAF NPIVDVMPVIP LFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSLICICINSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of EY702426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
PSBK_CITSI1.056e-2698.36Photosystem II reaction center protein K OS=Citrus... [more]
PSBK_VITVI8.367e-2490.16Photosystem II reaction center protein K OS=Vitis ... [more]
PSBK_JASNU8.367e-2490.16Photosystem II reaction center protein K OS=Jasmin... [more]
PSBK_MORIN1.864e-2390.16Photosystem II reaction center protein K OS=Morus ... [more]
PSBK_GOSHI2.435e-2388.52Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_GOSBA2.435e-2388.52Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_PANGI4.153e-2388.52Photosystem II reaction center protein K OS=Panax ... [more]
PSBK_COFAR4.153e-2385.25Photosystem II reaction center protein K OS=Coffea... [more]
PSBK_PHAAO5.424e-2385.25Photosystem II reaction center protein K OS=Phalae... [more]
PSBK_LIRTU9.251e-2386.89Photosystem II reaction center protein K OS=Liriod... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-G12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702426 ID=EY702426; Name=EY702426; organism=Citrus sinensis; type=EST; length=803bp
TTTTCCTCGACCCCGCGTCCGGAATTCAATTTACAATTGTATGAAAGTAT
GATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTGTTTTGATTGGG
TCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTTTTCTTCATTTT
TATCTTATATCAATAAGATATTAATAACTCAATCAAAATAAAATTATCTC
CAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTTAATGTATATCT
GTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCGCTAAATTACCC
GAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATGCCAGTAATACC
TGGTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTC
GATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATTTATTCTAGTTC
GAAAAAAAAAAAATTCTAACAATTACTTACATAAGAGCAGATGAGTGTTA
CAATATGAACGAACCCCCGCCTCAATTCAAACATTCAAACAATGAAATTC
TTGGGGAACCGAGATCCATTTTGATCCCCCATTTGCTATTTGCCATTTTG
ACCCTTCTTTCCTGAAACCATCTTATATTAGAGCCAACCAAAACGTAGAA
TTCTAACTGGGTGAATTTAATTGATGAACACCAGTTTCTATTTAAAGATT
CAATTCTCAAAAGAACTTCCTTTCCTGACTGTCAAATTGGATATGTACTA
TAAAAATAAAGACTCATTCTCTTTCTCCTTTTCCCCAAAACCTGCATTTG
GGA
back to top