CX078405

Overview
NameCX078405
Unique NameCX078405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4795 contig Csv1_Contig4795:120..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.638e-19
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  170 WCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKY 424
            WC+AK   +   L +NI+Y+C    VDC+PIQ GG+CF+P+S+ +HAS+ MN +Y++ G     C F GTG++ + +PS+G CKY
Sbjct:  377 WCVAKDGANGTDLQNNINYACGF--VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGCKY 459          
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  155 GVVTS--WCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKYP 427
            G VTS  WC+ K    +E L  ++D++C   G+DC  IQPGG+CF P++++SHA++AMN++++ + K   +C F+ T  + +QNPS+  C YP
Sbjct:  357 GKVTSSGWCVPKKGATNEELQASLDWACGH-GIDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPSYNNCVYP 448          
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  167 SWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKYPA 430
            SWC+ K    D  L   +DY+C   G DC P  P GSCFNPD++ +H ++A+N F++  G+   +C+F GT  + T +PS+  C +P+
Sbjct:   20 SWCVCKTGLSDSVLQKTLDYACGN-GADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGCAFPS 106          
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  161 VTSWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKYPA 430
            V  WC+AK + +D SL   I+++C Q G DC PIQ GG C +P  +   ASF  N +Y   G+    C+FN    + + NPS GTCKYP+
Sbjct:   38 VELWCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTCKYPS 127          
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  155 GVVTSWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKY 424
            G    WCIA        L   +D++C    VDC  +QP   CF PD+++SHAS+A N +Y+ +G +  +C FNG  + V ++PS+G C Y
Sbjct:  386 GGTKKWCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPSYGNCLY 475          
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  149 NEGVVTSWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKYPA*SKTPQ-LGDERKA 469
            N+    ++CIAK   D + L   +D++C    VDC  +  G SC+ PD +++H+++A N +Y+  GK   +C F G   + T +PS GTC +P  +K+ Q LG+   A
Sbjct:  353 NDTTNQTFCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSRGTCVFPGSAKSNQTLGNNTSA 460          
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.082e-16
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  167 SWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKYP 427
            SWC+ K    D  L   +DY+C   G DC P +P  SCFNPD++ SH ++A+N F++  G++  +C+F+GT      +PS+  C +P
Sbjct:   20 SWCVCKTGLSDTVLQATLDYACGN-GADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGCAFP 105          
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.942e-15
Identity = 32/92 (34.78%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  149 NEGVVTSWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKY 424
            N+    ++C A+   D + L   +D++C    +DC PI+ G +C+ PD++++HA++A + +Y   G N   C+FNG   I T +PS GTC +
Sbjct:  361 NDTTNQTYCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTCVF 452          
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  149 NEGVVTSWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKYPA*SK 439
            N+    ++CIA    D ++L   +D++C     +C  IQPG SC+ P+++  HASFA N +Y+  G+   +C F G  +I T +PS G+C +P   K
Sbjct:  265 NDTTNQTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSCIFPGSKK 361          
BLAST of CX078405 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 2
Query:  116 HSNGRVQEERRNEGVVTSWCIAKPSTDDESLNHNIDYSCRQKGVDCRPIQPGGSCFNPDSIISHASFAMNLFYKSAGKNYWNCHFNGTGLIVTQNPSWGTCKY 424
            HSN        + G   SWCIA     +  L   +D++C    VDC  IQP   CF PD+++SHASF  N +++        C F G G+ V ++PS+  C Y
Sbjct:  354 HSNS---SGTNSSGSSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKCIY 453          
The following BLAST results are available for this feature:
BLAST of CX078405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
E13B_WHEAT2.638e-1945.88Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E137_ARATH3.446e-1941.94Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E13L3_ARATH2.469e-1739.77Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L1_ARATH2.469e-1743.33Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E1312_ARATH2.090e-1638.89Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E133_ARATH2.730e-1635.19Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E13L2_ARATH6.082e-1639.08Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E132_ARATH3.942e-1534.78Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E131_ARATH6.725e-1536.08Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E1313_ARATH1.498e-1435.92Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8H01-P2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078405 ID=CX078405; Name=CX078405; organism=Citrus sinensis; type=EST; length=584bp
CCAACGCAACACAACAATGGAGGGCACAAGACACGCTTTGGCGTTTTTCC
TTCTAGCATTAGCTTTGCTGTTCTGGTTTGCGGATTGTTCAGGGCATGCG
GAGTTAAGTAGTACGCATTCTAATGGAAGAGTCCAAGAAGAGAGGAGAAA
TGAAGGCGTGGTGACCAGCTGGTGCATTGCTAAGCCATCAACAGACGATG
AGAGCCTCAATCACAACATTGATTACAGCTGTCGGCAGAAGGGAGTGGAC
TGTAGGCCAATTCAGCCAGGTGGCAGCTGCTTCAATCCAGACAGTATCAT
ATCGCATGCTTCTTTTGCTATGAATCTCTTTTACAAGTCAGCTGGCAAGA
ATTACTGGAACTGCCACTTCAATGGCACTGGTCTCATCGTCACCCAGAAT
CCATCTTGGGGCACCTGCAAGTATCCAGCATGATCAAAGACACCACAATT
AGGAGACGAAAGAAAGGCTAGCTAGCTTTTCGTTTAAATTAATCAGACTA
TCTCATTTGTAGTAACCAGTTTTAATAGTAGTAATTTGCAAGTCTCTCGT
GTTTCATTATCAAATATCAAATTCGTAAAAAAAA
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