CX078402

Overview
NameCX078402
Unique NameCX078402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4940 contig Csv1_Contig4940:1..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: YEJF_SCHPO (C2 domain-containing protein C31G5.15 OS=Schizosaccharomyces pombe GN=SPAC31G5.15 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.953e-39
Identity = 84/165 (50.91%), Postives = 109/165 (66.06%), Query Frame = -1
Query:  333 WIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 827
            WIKG +F+++ LLG    +  F+ G++ I RLAPQDYHRFH PV+G I     I G  YTVNP+A+ S Y +VF EN RV+  I +  FGKV  VA+GA MVGS     + G  V++ DE GYF FGGSTVI +FE +    D+DLL+NS   +ETLV +G R+G
Sbjct:  798 WIKGTEFTVERLLGYSNEAQRFVGGSICISRLAPQDYHRFHSPVNGCIGPITKIEGQYYTVNPMAIRS-YLDVFGENVRVLIPIDSNEFGKVMLVAVGAMMVGSTVLTVDEGKIVQRSDELGYFKFGGSTVITLFEPNVTSFDEDLLRNSKTKIETLVKMGERIG 961          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_CLONN (Phosphatidylserine decarboxylase proenzyme OS=Clostridium novyi (strain NT) GN=psd PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.235e-35
Identity = 77/164 (46.95%), Postives = 104/164 (63.41%), Query Frame = -1
Query:  333 IKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 824
            +KG  +S+  LL N   +  ++ GT ++FRLAP DYHRFH    GI E+ V I G  Y+VNPIA+  K   +F ENKR  SI  + HFG V +V +GAT VGSI       ++V KGDE GYF FGGST+I  FEKD I +DKD+++ + +  E  V +G ++G
Sbjct:  130 VKGLTYSLDELLKNIELAEKYIGGTCLLFRLAPVDYHRFHFIDDGICEEAVKISGSYYSVNPIALE-KVPKLFCENKREYSIFHSKHFGDVLYVDVGATCVGSIIQTYTPNEYVVKGDEKGYFKFGGSTIILFFEKDKIIVDKDIVEQTQKGFECKVLMGEKIG 292          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD2_YEAST (Phosphatidylserine decarboxylase proenzyme 2 OS=Saccharomyces cerevisiae GN=PSD2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.491e-35
Identity = 81/167 (48.50%), Postives = 108/167 (64.67%), Query Frame = -1
Query:  333 WIKGQKFSIQGLLGNDICSNSFL--NGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 827
            W+KG+KFSI+ L  N+    +F   N ++ IFRLAPQDYHRFH P +G I + V + G  YTVNP+AV S+  +VF EN RV+  I +  FGK+ ++ IGA MVGSI       D V+ G E GYF FGGST+I +   +    D DL++NS+  +ETLV VGM +G
Sbjct:  915 WVKGRKFSIKKL-ANNYNPETFNDNNCSIGIFRLAPQDYHRFHSPCNGTIGKPVYVDGEYYTVNPMAVRSEL-DVFGENIRVIIPIDSPQFGKLLYIPIGAMMVGSILLTCKENDVVESGQELGYFKFGGSTIIIIIPHNNFMFDSDLVKNSSERIETLVKVGMSIG 1079          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_FUSNN (Phosphatidylserine decarboxylase proenzyme OS=Fusobacterium nucleatum subsp. nucleatum GN=psd PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.892e-34
Identity = 74/168 (44.05%), Postives = 104/168 (61.90%), Query Frame = -1
Query:  324 WIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 827
            ++KG KF+++    +   +  + +GT VI RLAP DYHRFH PV G I +   I G  Y+V+  A+ + +  +F ENKR  +I+ T  FG +A   IGATMVG I     T   VKKG+E GYF FGGST I VFEK+ + IDKD+++N+   +ET + +G + G  K
Sbjct:  133 FVKGSKFTLEEFFNDKELAKKYEDGTFVIVRLAPADYHRFHFPVDGEISEIKKILGYYYSVSTHAIKTNF-RIFCENKREYAILKTEKFGDIAMFDIGATMVGGIVQTYKTNSSVKKGEEKGYFLFGGSTCILVFEKNKVVIDKDIIENTQNKIETRIYMGEKFGNEK 299          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_CLOBH (Phosphatidylserine decarboxylase proenzyme OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=psd PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.601e-33
Identity = 75/167 (44.91%), Postives = 102/167 (61.08%), Query Frame = -1
Query:  324 IKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 824
            +KG  +S   L+ ND  +  + NGT ++ RL P DYHRFH   +GI E  + + G  Y+VNPIA+ SK  +VF +NKR  SI  + +FG + F+ +GAT VGSI         + KGDE GYF FGGSTVI  F+K+ I+ID D+L  S    ET V +G  +G+ K
Sbjct:  130 VKGINYSFYELINNDSLAKEYDNGTCLVLRLCPTDYHRFHFIDNGICENTIKLKGFYYSVNPIAL-SKIPSVFCKNKREYSIFHSENFGDIIFMEVGATCVGSIIQTYKPNTKILKGDEKGYFKFGGSTVILFFKKNTIKIDNDILNQSKLGYETSVVMGESIGIKK 295          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_CLOB1 (Phosphatidylserine decarboxylase proenzyme OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=psd PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.601e-33
Identity = 75/167 (44.91%), Postives = 102/167 (61.08%), Query Frame = -1
Query:  324 IKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 824
            +KG  +S   L+ ND  +  + NGT ++ RL P DYHRFH   +GI E  + + G  Y+VNPIA+ SK  +VF +NKR  SI  + +FG + F+ +GAT VGSI         + KGDE GYF FGGSTVI  F+K+ I+ID D+L  S    ET V +G  +G+ K
Sbjct:  130 VKGINYSFYELINNDSLAKEYDNGTCLVLRLCPTDYHRFHFIDNGICENTIKLKGFYYSVNPIAL-SKIPSVFCKNKREYSIFHSENFGDIIFMEVGATCVGSIIQTYKPNTKILKGDEKGYFKFGGSTVILFFKKNTIKIDNDILNQSKLGYETSVVMGESIGIKK 295          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_CHLTR (Phosphatidylserine decarboxylase proenzyme OS=Chlamydia trachomatis GN=psd PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.092e-33
Identity = 73/164 (44.51%), Postives = 108/164 (65.85%), Query Frame = -1
Query:  333 IKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 824
            IK + FS++  LG+   ++ +  G+M I RLAP DYHRFH P++GI E    I G L++++P+ +   +  VFTENKR ++II++  FG+VA+V +GA  VGSI    + G +VKKG E G+F+FGGSTV+ +F+   I  D DL+  SA+ LET   +G  +G
Sbjct:  134 IKNKPFSLESFLGDPQLAHQYAQGSMAIARLAPFDYHRFHFPIAGIAEAPRRINGHLFSIHPLMLKRNF-EVFTENKREITIITSKEFGEVAYVEVGALNVGSIHQTFSPGSYVKKGAEKGFFAFGGSTVVLLFQPQRIIFDADLVGYSAQGLETRCRMGQSLG 296          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_CHLTB (Phosphatidylserine decarboxylase proenzyme OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=psd PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.092e-33
Identity = 73/164 (44.51%), Postives = 108/164 (65.85%), Query Frame = -1
Query:  333 IKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 824
            IK + FS++  LG+   ++ +  G+M I RLAP DYHRFH P++GI E    I G L++++P+ +   +  VFTENKR ++II++  FG+VA+V +GA  VGSI    + G +VKKG E G+F+FGGSTV+ +F+   I  D DL+  SA+ LET   +G  +G
Sbjct:  134 IKNKPFSLESFLGDPQLAHQYAQGSMAIARLAPFDYHRFHFPIAGIAEAPRRINGHLFSIHPLMLKRNF-EVFTENKREITIITSKEFGEVAYVEVGALNVGSIHQTFSPGSYVKKGAEKGFFAFGGSTVVLLFQPQRIIFDADLVGYSAQGLETRCRMGQSLG 296          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_CHLTA (Phosphatidylserine decarboxylase proenzyme OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=psd PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.092e-33
Identity = 73/164 (44.51%), Postives = 108/164 (65.85%), Query Frame = -1
Query:  333 IKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 824
            IK + FS++  LG+   ++ +  G+M I RLAP DYHRFH P++GI E    I G L++++P+ +   +  VFTENKR ++II++  FG+VA+V +GA  VGSI    + G +VKKG E G+F+FGGSTV+ +F+   I  D DL+  SA+ LET   +G  +G
Sbjct:  134 IKNKPFSLESFLGDPQLAHQYAQGSMAIARLAPFDYHRFHFPIAGIAEAPRRINGHLFSIHPLMLKRNF-EVFTENKREITIITSKEFGEVAYVEVGALNVGSIHQTFSPGSYVKKGAEKGFFAFGGSTVVLLFQPQRIIFDADLVGYSAQGLETRCRMGQSLG 296          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_CHLT2 (Phosphatidylserine decarboxylase proenzyme OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=psd PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.092e-33
Identity = 73/164 (44.51%), Postives = 108/164 (65.85%), Query Frame = -1
Query:  333 IKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 824
            IK + FS++  LG+   ++ +  G+M I RLAP DYHRFH P++GI E    I G L++++P+ +   +  VFTENKR ++II++  FG+VA+V +GA  VGSI    + G +VKKG E G+F+FGGSTV+ +F+   I  D DL+  SA+ LET   +G  +G
Sbjct:  134 IKNKPFSLESFLGDPQLAHQYAQGSMAIARLAPFDYHRFHFPIAGIAEAPRRINGHLFSIHPLMLKRNF-EVFTENKREITIITSKEFGEVAYVEVGALNVGSIHQTFSPGSYVKKGAEKGFFAFGGSTVVLLFQPQRIIFDADLVGYSAQGLETRCRMGQSLG 296          
The following BLAST results are available for this feature:
BLAST of CX078402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
YEJF_SCHPO1.953e-3950.91C2 domain-containing protein C31G5.15 OS=Schizosac... [more]
PSD_CLONN2.235e-3546.95Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]
PSD2_YEAST8.491e-3548.50Phosphatidylserine decarboxylase proenzyme 2 OS=Sa... [more]
PSD_FUSNN1.892e-3444.05Phosphatidylserine decarboxylase proenzyme OS=Fuso... [more]
PSD_CLOBH1.601e-3344.91Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]
PSD_CLOB11.601e-3344.91Phosphatidylserine decarboxylase proenzyme OS=Clos... [more]
PSD_CHLTR2.092e-3344.51Phosphatidylserine decarboxylase proenzyme OS=Chla... [more]
PSD_CHLTB2.092e-3344.51Phosphatidylserine decarboxylase proenzyme OS=Chla... [more]
PSD_CHLTA2.092e-3344.51Phosphatidylserine decarboxylase proenzyme OS=Chla... [more]
PSD_CHLT22.092e-3344.51Phosphatidylserine decarboxylase proenzyme OS=Chla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8G12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8G12-N24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078402 ID=CX078402; Name=CX078402; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTGTCCAAAAAGATAAGCAGTGCGCCAAAGACGCAAATTGTGAAG
CTGGGGAAAAAGATAAGCAGTGCGCCAAAGACGCAAATTGTGAAGCTGGG
GATGCAATTTCTACAATAGCTACAAAATTAAGTAGCATGTCAATGACTTT
AATGGAGAAGCCAATGTCTACTAAGCCTTAGCTCACATTATTCAAGCTGC
TATAAGACAATCTTCCAAGCTTGGTAACTCAGTTTGAAGTATGTACTAAG
CCTTAGCTCACCTTATTCAAGCTGCTATAACACAAGCTTCCAAGCTTGGT
AACTCAGTTTGAAGTATTTCCTTTTTGGAGACTCCCATCCTCATTCCTAC
GGAAACTAATGTTTCCAGGGCTCTGGCACTATTTTGTAGGAGGTCCTTGT
CTATTTGTATTGCATCCTTTTCAAATACACAAATTACTGTGCTCCCACCA
AATGAGAAATATCCAAACTCATCTCCTTTTTTGACAAAGTCACCCGTGTT
CTTCAGAAAAGTGATGCTACCAACCATGGTTGCACCAATTGCTACAAAGG
CTACCTTTCCGAAATGTGCAGTCGAAATAATTGATACAACACGCTTGTTC
TCCGTAAAAACATTGCAATATTTGCTATTAACAGCAATGGGATTAACAGT
GTATAGGCATCCAGGAATATCCACAAATTGCTCAATGATTCCCGACACCG
GAAGATGAAAACGATGATAATCCTGTGGCGCCAACCGAAAAATCACCATA
GTTCCATTTAAAAAAGAATTGGAACATATGTCATTTCCCAAAAGACCTTG
AATTGAAAACTTTTGACCCTTGATCCA
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