CX078396

Overview
NameCX078396
Unique NameCX078396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3055 contig Csv1_Contig3055:53..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX078396 vs. ExPASy Swiss-Prot
Match: SKIP5_ARATH (F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.081e-43
Identity = 90/126 (71.43%), Postives = 101/126 (80.16%), Query Frame = -3 
Query:  104 SALEFLSTCKLANLTVRAELGCCLLHRSGRLTIDGCVLQCETNPLDFLSCPIVSTA-----RSCITSTPMKS------NGDSVTVLHTRIEGGAKAVLTSGDLVLQRVRVIYARTYLYFWFDVDHQ 448
            SALE LSTCKLANLTV+AELGCCLLHRSGRLTIDGCVLQCETNPLD LSCPIVSTA      + ++   +K         +SVTVL TRIEGGAKAV T GDLVLQRVRV+Y++ YLYFWFDVD++
Sbjct:  149 SALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCPIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVMYSKAYLYFWFDVDYE 274
The following BLAST results are available for this feature:
BLAST of CX078396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKIP5_ARATH3.081e-4371.43F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKI... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_8G09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8G09-N18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078396 ID=CX078396; Name=CX078396; organism=Citrus sinensis; type=EST; length=861bp
TTTTTTTTTTACATAAAACTTCGAATATTAAAATTAATGAGAAATCAGCA
GTAACTTTGCAAACAGTGGAAAATGTTACATAAAAATGAGAATACAGTTT
TCATTGATGGTCTACATCGAACCAGAAATACAGATAAGTCCTGGCATATA
TAACTCGAACTCGCTGCAGCACTAGATCTCCACTAGTCAAAACAGCCTTG
GCACCTCCTTCAATTCGAGTATGCAAAACAGTAACACTATCACCATTACT
CTTCATTGGAGTAGATGTAATACAGCTACGAGCTGTACTCACGATTGGGC
ATGAGAGGAAGTCCAGTGGATTCGTCTCACACTGAAGTACACACCCATCT
ATAGTTAACCTTCCACTCCGATGGAGCAAGCAGCAGCCAAGCTCTGCTCT
CACTGTTAAATTCGCCAGCTTGCACGTGGATAGAAACTCCAAGGCACTGC
CCAAACAAAACAAATATTGCATAGCAAATTTTGTTGCTTGAGATATTATG
CCGGTCATTTTCGAGGATCCTACTTCATATTTTTGAATAAAAATCTAAAG
GAAGAGGCTTGGTATAAAACAGCTCAACCTTAAAATATATAACAAGATCT
TGAAAAAGAGCAGCCAGCACATCACAATAATTCATCTTATGTGATGATTT
ATTATATCTACCTGTGAACCATGCATAAAGTCTGTTGAATTAAAGTGTCA
CTCCTATTAAAGGTATCTTCTGTAAAATCCAACAATATGAAAGGGTCCTC
ATGTAATTGTAATTAATCTCCACAAAACAGTATAACTTAATCTGAAATAA
AAACCAGAAAATTCACAAACCTGTCCGAACCTCGAGAACAGATTAGGGTT
GTTTCATCAGG
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