CX078380

Overview
NameCX078380
Unique NameCX078380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX11_ARATH (WUSCHEL-related homeobox 11 OS=Arabidopsis thaliana GN=WOX11 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.084e-61
Identity = 137/265 (51.70%), Postives = 164/265 (61.89%), Query Frame = -2
Query:   87 SRGSAERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXQYEINSNCAAAALPMGFAATSPATFGSTPCTNFVAGSSSFCGVMGGG------DGVETLYSVSGQMGFQEVV-----DQNSSVTSMLCPSE-SSNLQYQTGFITVFINGAPTEIPRGPIDMKALFGQDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVSR 845
            S  S   S EPVRSRW+PKPEQILILESIF+SGMVNPPK+ETVRIRK+LEKFG+VGDANVFYWFQN                A                        NS    +   +GF        G +  +N++  SSS     GGG       G+E L ++SGQM + E       + +S+VTS+LCPS+ +SN  YQ G ITVFING PTE+ RG IDMKA FG+D+VLVHSSGVP+PT+EFGFLM SLQHGE+YFLV R
Sbjct:   19 SSASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQRQLQAAAAAAAATTNTCDQTMMVS--------NSLPHHSGSDLGFG-------GCSTSSNYLFASSS--SSYGGGCDNQSNSGMENLLTMSGQMSYHEATHHHYQNHSSNVTSILCPSDQNSNFHYQQGAITVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFLMHSLQHGEAYFLVPR 266          
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX12_ARATH (WUSCHEL-related homeobox 12 OS=Arabidopsis thaliana GN=WOX12 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.405e-55
Identity = 125/264 (47.35%), Postives = 157/264 (59.47%), Query Frame = -2
Query:   87 SRGSAERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXQYEINSNCAAAALPMGFAATSPAT-------FGSTPCTNFVAGSSSFCGVMGGGDGVETLYSVSGQMGFQEVVDQ--NSSVTSMLCPS-ESSNLQY-QTGFITVFINGAPTEIPRGPIDMKALFGQDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVSR 845
            S   +  STEPVR+RW+PKPEQILILESIFNSG VNPPKDETVRIRK+LEKFG+VGDANVFYWFQN                                     QY  ++N     + +GF + S  +         S+   +F  G SS  G     +G+E L+ + G         Q  +S+  S+L PS ++SN QY Q GF+TVFING P E+ +G IDMK +FG D VL+HSSG+P+PT+EFGFLM SLQHG++YFLV R
Sbjct:    7 SHSPSSTSTEPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRHRQLLAATTAAATSIGAEDHQHMTAMSMHQYPCSNN----EIDLGFGSCSNLSANYFLNGSSSSQIPSFFLGLSSSSGGCENNNGMENLFKMYGHESDHNHQQQHHSSNAASVLNPSDQNSNSQYEQEGFMTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSGLPLPTDEFGFLMHSLQHGQTYFLVPR 266          
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX11_ORYSJ (WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. japonica GN=WOX11 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.749e-51
Identity = 117/257 (45.53%), Postives = 152/257 (59.14%), Query Frame = -2
Query:   87 RGSAERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXQYEINSNCAAAALPMGFAATSPATFGSTPCTNFVAGSSSFCGVMGG---GDGVETLYSVSGQMGFQEVVDQNSSVTSMLCPSESSNLQY--QTGFITVFINGAPTEIPRGPIDMKALFGQDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVSR 842
            R +A  + EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLE+FG+VGDANVFYWFQN                                           +  + A  +G  A   A + S+  +++ +   S   +MG    G G + L+++S QMG+ +     SS ++     +   L Y  Q   +TVFING  TE+PRGPID++++FGQDV+LVHS+G  +P NE+G L+ SLQ GESYFLV+R
Sbjct:    9 RHAAAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQRQLQAQAQAAAAAASSGSPPTASSGGLAP----GHAGSPASSLGMFAHGAAGYSSSSSSSWPSSPPSVGMMMGDVDYGGGGDDLFAISRQMGYMD-GGGGSSSSAAAGQHQQQQLYYSCQPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYFLVTR 260          
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX6_ORYSJ (WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. japonica GN=WOX6 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.220e-49
Identity = 132/310 (42.58%), Postives = 159/310 (51.29%), Query Frame = -2
Query:   84 GSAERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXQYEINSNCAAAA-------LPMGFAATSPATFGSTPCTNFVAGSSSFCGVMGG--------------------------------------GDGVET-----LYSVSGQMGFQEVVDQNSSVTSMLCPSESS--------NLQYQTGFITVFINGAPTEIPRGPIDMKALFGQDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVSRP 839
            G    + EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLE+FG+VGDANVFYWFQN                A                        N++ AAA+       LP G    + A  GS       A SSS  G  GG                                      GD V++     L+++S QMGF     + S  +S   PS ++        + Q     ITVFING P E+PRGPID++A+FGQDV+LVHS+G  +P N++G LMQSLQ GESYFLV+RP
Sbjct:   30 GGRSAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQRQMQAAAAAAAAAASSSSP-----------SANTSPAAASAATVQVGLPPGAVVHTMAMGGSACQYEQQASSSSSSGSTGGSSLGLFAHGAGASGAGGYLQASCGASASASSALAPGLMGDVVDSGGSDDLFAISRQMGFVG-SPRCSPASSPATPSSAATAAQQQFYSCQLPAATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLVARP 327          
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX10_ORYSJ (WUSCHEL-related homeobox 10 OS=Oryza sativa subsp. japonica GN=WOX10 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.774e-41
Identity = 103/246 (41.87%), Postives = 127/246 (51.63%), Query Frame = -2
Query:   87 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXQYEINSNCAAAALPMGFAATSPATFGSTPCTNFVAGSSSFCGVMGGGDGVETLYSVSGQMGFQEVVDQNSSVTSMLCPSESSNLQYQ-TGFITVFINGAPTEIPR-GPIDMKALFGQDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVSR 818
            EP RSRW PKPEQILILESIFNSGMVNP KDET RIR+LLE+FG+V DANVFYWFQN                                      Y  +   +++   M           ST     VA S  F      G G + L+++S QMG            S    S+++ L YQ TG I VFING   ++P  G +DM   FG+D +LVHSSG  +P +E G L+ SLQ GE Y+LVS+
Sbjct:   38 EPARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRRARQLQQACGAALHQLPSAAAAAGAGGGGDYYHHHHQPSSSPFLM-HGGGGGGVVTSTTAAPAVAASGHFLADEVDGGGDDDLFAISRQMGLMARHGGGDHHYSSYADSDATQLSYQPTGTIQVFINGVAYDVPSGGALDMAGTFGRDAMLVHSSGEVLPVDEHGVLINSLQMGECYYLVSK 282          
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX10_ORYSI (WUSCHEL-related homeobox 10 OS=Oryza sativa subsp. indica GN=WOX10 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 102/246 (41.46%), Postives = 126/246 (51.22%), Query Frame = -2
Query:   87 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXQYEINSNCAAAALPMGFAATSPATFGSTPCTNFVAGSSSFCGVMGGGDGVETLYSVSGQMGFQEVVDQNSSVTSMLCPSESSNLQYQ-TGFITVFINGAPTEIPR-GPIDMKALFGQDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVSR 818
            EP RSRW PKPEQILILESIFNSGMVNP KDET RIR+LLE+FG+V DANVFYWFQN                                      Y  +   +++   M           ST     VA S  F      G G + L+++S QMG                 S+++ L YQ TG I VFING   ++P  G +DM   FG+D +LVHSSG  +P +E G L+ SLQ GE Y+LVS+
Sbjct:   38 EPARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRRARQLQQACGAALHQLPSAAAAAGAGGGGGYYHHHHQPSSSPFLM-HGGGGGGVVTSTTAAPAVAASGHFLADEVDGGGDDDLFAISRQMGLMARHGGGDHHYGSYADSDATQLSYQPTGTIQVFINGVAYDVPSGGALDMAGTFGRDAMLVHSSGEVLPVDEHGVLINSLQMGECYYLVSK 282          
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX6_ORYSI (WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. indica GN=WOX6 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.141e-26
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = -2
Query:  648 GSAERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQN 839
            G    + EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLE+FG+VGDANVFYWFQN
Sbjct:   30 GGRSAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 93          

HSP 2 Score: 107.842 bits (268), Expect = 7.657e-23
Identity = 64/148 (43.24%), Postives = 88/148 (59.46%), Query Frame = -2
Query:   84 GFAATSPATFGSTPCTNFVAGSSSFC-GVMGG---GDGVETLYSVSGQMGFQEVVDQNSSVTSMLCPSESSNLQYQTGF--------ITVFINGAPTEIPRGPIDMKALFGQDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVSRP 491
            G  A+    +    C    + SS+   G+MG      G + L+++S QMGF     + S  +S   PS ++    Q  +        ITVFING P E+PRGPID++A+FGQDV+LVHS+G  +P N++G LMQSLQ GESYFLV+RP
Sbjct:  181 GAGASGAGGYLQASCGASASASSALAPGLMGDVVDSGGSDDLFAISRQMGFVGS-PRCSPASSPATPSSAATAAQQQFYSCQLPAATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLVARP 327          
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX9_ARATH (WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana GN=WOX9 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.760e-19
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = -2
Query:  648 ERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQN 830
            ERS EP + RW PKPEQI ILE+IFNSGMVNPP++E  RIR  L+++G VGDANVFYWFQN
Sbjct:   47 ERSPEP-KPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQN 106          

HSP 2 Score: 67.0106 bits (162), Expect = 2.298e-11
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = -2
Query:   93 PSESSNLQYQTGF-ITVFINGAPTEIPRGPIDMKALFGQDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLV 305
            PS S  LQ Q    I VFIN    E+  GP +++  FG++VVL++S+G PI T+E+G  +  LQHG SY+L+
Sbjct:  307 PSTSDQLQVQADARIRVFINEMELEVSSGPFNVRDAFGEEVVLINSAGQPIVTDEYGVALHPLQHGASYYLI 378          

HSP 3 Score: 21.557 bits (44), Expect = 2.298e-11
Identity = 8/11 (72.73%), Postives = 8/11 (72.73%), Query Frame = -3
Query:  281 CYAHQNHQICS 313
            CYA  NHQI S
Sbjct:  263 CYATTNHQIAS 273          
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX7_ORYSJ (WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. japonica GN=WOX7 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = -2
Query:  648 ERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQN 830
            ER  +P + RW P+PEQI ILE+IFNSGMVNPP+DE  RIR  L+++G VGDANVFYWFQN
Sbjct:   61 ERVPDP-KPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQN 120          
BLAST of CX078380 vs. ExPASy Swiss-Prot
Match: WOX12_ORYSJ (WUSCHEL-related homeobox 12 OS=Oryza sativa subsp. japonica GN=WOX12 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = -2
Query:  648 RSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQN 827
            R+ EP + RW P+PEQI ILE IFNSGMVNPP+DE  RIR  L+++G VGDANVFYWFQN
Sbjct:   65 RNPEP-KPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQN 123          
The following BLAST results are available for this feature:
BLAST of CX078380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WOX11_ARATH7.084e-6151.70WUSCHEL-related homeobox 11 OS=Arabidopsis thalian... [more]
WOX12_ARATH3.405e-5547.35WUSCHEL-related homeobox 12 OS=Arabidopsis thalian... [more]
WOX11_ORYSJ1.749e-5145.53WUSCHEL-related homeobox 11 OS=Oryza sativa subsp.... [more]
WOX6_ORYSJ6.220e-4942.58WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. ... [more]
WOX10_ORYSJ4.774e-4141.87WUSCHEL-related homeobox 10 OS=Oryza sativa subsp.... [more]
WOX10_ORYSI1.389e-4041.46WUSCHEL-related homeobox 10 OS=Oryza sativa subsp.... [more]
WOX6_ORYSI1.141e-2687.50WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. ... [more]
WOX9_ARATH8.760e-1972.13WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana... [more]
WOX7_ORYSJ5.678e-1868.85WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. ... [more]
WOX12_ORYSJ9.686e-1870.00WUSCHEL-related homeobox 12 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8G01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8G01-N2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078380 ID=CX078380; Name=CX078380; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTTTGGAATTACTACATATAAGAGGACGAAGCTCCCA
TTTGTTGCACCTTGATTTGATTCCTGTTTATGCTGGTCTTGAAACCAGGA
AATAGCTTTCACCATGCTGCAAGCTCTGCATTAGAAACCCAAATTCATTT
GTTGGTATTGGCACGCCAGAGGAATGGACCAAAACTACATCTTGGCCAAA
CAAAGCTTTCATGTCAATTGGTCCCCTTGGAATTTCTGTTGGCGCACCAT
TGATAAAAACTGTGATAAATCCAGTTTGGTACTGCAAATTTGATGATTCT
GATGGGCATAACATTGATGTTACACTAGAGTTCTGGTCAACTACTTCTTG
AAAACCCATTTGGCCAGACACTGAATATAGGGTTTCAACTCCATCACCAC
CACCCATAACTCCACAAAATGAAGAAGAGCCAGCAACAAAATTAGTACAT
GGAGTGGAACCAAAGGTAGCTGGAGAAGTAGCAGCAAACCCCATAGGCAG
AGCAGCAGCCGCACAATTACTATTAATTTCATATTGAATTGCACCAGCTG
CACTAGAGGCTTGTGCCTGCTGAATATTATTATTTCTTTGTTCCCCAGCA
AGGCTAGCTTGCAACTGGCGTTGTCGGCGGCGAGATCTTGAACGTCTGTT
TTGGAACCAGTAGAAAACGTTAGCATCACCAACAGAACCAAATTTTTCAA
GAAGCTTTCTTATCCTCACAGTTTCATCTTTAGGAGGATTAACCATGCCA
CTATTGAAGATGGACTCAAGTATGAGAATTTGTTCAGGCTTTGGAGTCCA
TCTTGACCTCACTGGTTCAGTACTTCTCTCAGCTGAGCCACGACTT
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