CX078367

Overview
NameCX078367
Unique NameCX078367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_CITSI (ATP synthase subunit b, chloroplastic OS=Citrus sinensis GN=atpF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.704e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD
Sbjct:   60 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 119          
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_POPTR (ATP synthase subunit b, chloroplastic OS=Populus trichocarpa GN=atpF PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEADQFRVNGYSEIEREK NLINSTYKTL+
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLINSTYKTLE 119          
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_POPAL (ATP synthase subunit b, chloroplastic OS=Populus alba GN=atpF PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEADQFRVNGYSEIEREK NLINSTYKTL+
Sbjct:   60 ILNTIRNSEELRGGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLINSTYKTLE 119          
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_LACSA (ATP synthase subunit b, chloroplastic OS=Lactuca sativa GN=atpF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.470e-22
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEADQFRVNGYSEIEREK NLI+STYKTL+
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLIDSTYKTLE 119          
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_HELAN (ATP synthase subunit b, chloroplastic OS=Helianthus annuus GN=atpF PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.625e-22
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILN+IRNSEEL+ GAIE+LEKARARLRKIEIEAD+FRVNGYSEIEREK NLI+STYKTL+
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKIEIEADEFRVNGYSEIEREKLNLIDSTYKTLE 119          
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_GOSHI (ATP synthase subunit b, chloroplastic OS=Gossypium hirsutum GN=atpF PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.625e-22
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILN+IRNSEEL+ GAIERLEKARARLRK+E+EADQFRVNGYSEIEREK NLINSTYK L+
Sbjct:   60 ILNTIRNSEELRGGAIERLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTYKILE 119          
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_GOSBA (ATP synthase subunit b, chloroplastic OS=Gossypium barbadense GN=atpF PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.625e-22
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILN+IRNSEEL+ GAIERLEKARARLRK+E+EADQFRVNGYSEIEREK NLINSTYK L+
Sbjct:   60 ILNTIRNSEELRGGAIERLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTYKILE 119          
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_GUIAB (ATP synthase subunit b, chloroplastic OS=Guizotia abyssinica GN=atpF PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.959e-22
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILN+IRNSEEL+ GAIE+LEKARARLRK+EIEAD+FRVNGYSEIEREK NLI+STYKTL+
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEIEADEFRVNGYSEIEREKLNLIDSTYKTLE 119          
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_VITVI (ATP synthase subunit b, chloroplastic OS=Vitis vinifera GN=atpF PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.219e-21
Identity = 50/60 (83.33%), Postives = 57/60 (95.00%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQ+RVNGYSEIEREK NLINSTY TL+
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEMEADQYRVNGYSEIEREKLNLINSTYNTLE 119          
BLAST of CX078367 vs. ExPASy Swiss-Prot
Match: ATPF_PANGI (ATP synthase subunit b, chloroplastic OS=Panax ginseng GN=atpF PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.219e-21
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 2
Query:  611 ILNSIRNSEELQRGAIERLEKARARLRKIEIEADQFRVNGYSEIEREKFNLINSTYKTLD 790
            ILN+IRNSEEL+ GAIE+LEKARARLRK+E+EADQFRVNGYSEIEREK+N INST KTLD
Sbjct:   60 ILNTIRNSEELREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKWNFINSTSKTLD 119          
The following BLAST results are available for this feature:
BLAST of CX078367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
ATPF_CITSI8.704e-26100.00ATP synthase subunit b, chloroplastic OS=Citrus si... [more]
ATPF_POPTR2.007e-2288.33ATP synthase subunit b, chloroplastic OS=Populus t... [more]
ATPF_POPAL2.007e-2288.33ATP synthase subunit b, chloroplastic OS=Populus a... [more]
ATPF_LACSA4.470e-2286.67ATP synthase subunit b, chloroplastic OS=Lactuca s... [more]
ATPF_HELAN7.625e-2286.67ATP synthase subunit b, chloroplastic OS=Helianthu... [more]
ATPF_GOSHI7.625e-2286.67ATP synthase subunit b, chloroplastic OS=Gossypium... [more]
ATPF_GOSBA7.625e-2286.67ATP synthase subunit b, chloroplastic OS=Gossypium... [more]
ATPF_GUIAB9.959e-2285.00ATP synthase subunit b, chloroplastic OS=Guizotia ... [more]
ATPF_VITVI2.219e-2183.33ATP synthase subunit b, chloroplastic OS=Vitis vin... [more]
ATPF_PANGI2.219e-2185.00ATP synthase subunit b, chloroplastic OS=Panax gin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8F06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8F06-L12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078367 ID=CX078367; Name=CX078367; organism=Citrus sinensis; type=EST; length=792bp
TAAAGTTTGAAGTCCAGACACAGCACGGTACTCTTTCTACTACTATGTTT
TACTATAGAATAGAAATGTTTTCAAAATGAATAATTAATAAATGAATAAT
TAATAATAATTATTGGACTTTTTTTTTTTCGATATAAAACACTCATGTTG
ATAAAAAGATTTGAGCCTTTTATTGGTATTGGAAATTTGATTGGAAAATA
TTGGAAAAATAGGTATTTCAACCAACCCTTATTTATGCTGAATCGATGAC
CTCCATATAAAGTAAGAAGAATTCTTTGGATTTGAAGAAAAAAAGAAACA
ACTTTGCTGACAATTATATATTTTGATTTGGTCAGAAGAGTCCTCCGAAT
ATTCTGTTCTTGGATTAGGGATCAGTCGCAAGATTCATTTTGGAATATGA
ATAGAGAAGAGAGGGAGAGGATAGGCTCATTACATTAAAAAAAGATATGG
GAACCCCCCCCATACATAAGTAGTTGACGTAATTGAGTGGGAGAGCCAAA
TGAATCGAAAAATTCATGTTTGGTTCGGGAAGGGATCATCGAAGTTTTGA
GATGAATGGAAAGATAATCTACTTTCATTAAGTGATTTATTAGATAATCG
CAAACTGAGGATTTTGAATAGTATTCGAAATTCAGAAGAACTGCAGAGAG
GGGCCATTGAACGGCTGGAAAAAGCCCGGGCCCGGTTACGAAAAATAGAA
ATAGAAGCAGATCAGTTTCGAGTGAATGGATACTCTGAGATAGAACGAGA
AAAATTCAATTTGATTAATTCAACTTATAAGACTTTGGATCA
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