CX078363

Overview
NameCX078363
Unique NameCX078363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_CITSI (DNA-directed RNA polymerase subunit alpha OS=Citrus sinensis GN=rpoA PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.474e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN
Sbjct:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 99
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_EUCGG (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus GN=rpoA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.380e-47
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            MVREKV+VSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLK+IVLRSN
Sbjct:    1 MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSN 99
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_SOYBN (DNA-directed RNA polymerase subunit alpha OS=Glycine max GN=rpoA PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.015e-47
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            MVREK++VSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITR KSEKIPHEYSTI+GI+ESVHEILMNLK+IVLRSN
Sbjct:    1 MVREKIRVSTRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRVKSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSN 99
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_PLAOC (DNA-directed RNA polymerase subunit alpha OS=Platanus occidentalis GN=rpoA PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.015e-47
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            MVREKV VSTRTLQWKCVESRADSKRLYYGRFILSPL+KGQADTIGIAMRR LLGEIEGTCITRAKSEKIPHEYSTIVGI+ESVHEILMNLK+IVLRSN
Sbjct:    1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLIKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSN 99
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_OENEH (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri GN=rpoA PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.015e-47
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            MVREKV+VSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLK+IVLRSN
Sbjct:    1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSN 99
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_PEA (DNA-directed RNA polymerase subunit alpha OS=Pisum sativum GN=rpoA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.244e-47
Identity = 91/99 (91.92%), Postives = 97/99 (97.98%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            M+REK+KVST+TLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGI MRR+LLGEIEGTCITRAKSEKIPHEYSTIVGIQES+HEILMNLK+IVLRSN
Sbjct:    1 MIREKLKVSTQTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGITMRRILLGEIEGTCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSN 99
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_CUCSA (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus GN=rpoA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.849e-47
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            MVREK++VSTRTL+WKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMR+ LLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK+IVLRSN
Sbjct:    1 MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSN 99
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_PANGI (DNA-directed RNA polymerase subunit alpha OS=Panax ginseng GN=rpoA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.945e-47
Identity = 91/99 (91.92%), Postives = 98/99 (98.99%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            MV+EKV+VSTRTLQWKCVE+RADSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGTCITRAKSEKIPHEYST+VGIQESVHEILMNLK+I+L+SN
Sbjct:    1 MVQEKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILKSN 99
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_POPTR (DNA-directed RNA polymerase subunit alpha OS=Populus trichocarpa GN=rpoA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.168e-46
Identity = 91/99 (91.92%), Postives = 97/99 (97.98%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            MVREKV++STRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGTCITRAKS+KIPHE+STI GIQES+HEILMNLK+IVLRSN
Sbjct:    1 MVREKVRISTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSKKIPHEFSTITGIQESIHEILMNLKEIVLRSN 99
[Close]
BLAST of CX078363 vs. ExPASy Swiss-Prot
Match: RPOA_POPAL (DNA-directed RNA polymerase subunit alpha OS=Populus alba GN=rpoA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.168e-46
Identity = 91/99 (91.92%), Postives = 97/99 (97.98%), Query Frame = -2 
Query:    1 MVREKVKVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSN 297
            MVREKV++STRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGTCITRAKS+KIPHE+STI GIQES+HEILMNLK+IVLRSN
Sbjct:    1 MVREKVRISTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSKKIPHEFSTITGIQESIHEILMNLKEIVLRSN 99
The following BLAST results are available for this feature:
BLAST of CX078363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOA_CITSI1.474e-49100.00DNA-directed RNA polymerase subunit alpha OS=Citru... [more]
RPOA_EUCGG1.380e-4795.96DNA-directed RNA polymerase subunit alpha OS=Eucal... [more]
RPOA_SOYBN4.015e-4792.93DNA-directed RNA polymerase subunit alpha OS=Glyci... [more]
RPOA_PLAOC4.015e-4794.95DNA-directed RNA polymerase subunit alpha OS=Plata... [more]
RPOA_OENEH4.015e-4794.95DNA-directed RNA polymerase subunit alpha OS=Oenot... [more]
RPOA_PEA5.244e-4791.92DNA-directed RNA polymerase subunit alpha OS=Pisum... [more]
RPOA_CUCSA6.849e-4792.93DNA-directed RNA polymerase subunit alpha OS=Cucum... [more]
RPOA_PANGI8.945e-4791.92DNA-directed RNA polymerase subunit alpha OS=Panax... [more]
RPOA_POPTR1.168e-4691.92DNA-directed RNA polymerase subunit alpha OS=Popul... [more]
RPOA_POPAL1.168e-4691.92DNA-directed RNA polymerase subunit alpha OS=Popul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8F03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8F03-L6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078363 ID=CX078363; Name=CX078363; organism=Citrus sinensis; type=EST; length=790bp
ATTACTTCTCAATACAATATCTTTCAAATTCATTAAAATTTCATGTACCG
ATTCTTGAATACCCACTATGGTAGAATATTCGTGTGGAATTTTTTCAGAT
TTTGCGCGTGTAATACATGTTCCTTCTATTTCTCCAAGCAAAACTCTTCG
CATCGCAATGCCTATTGTGTCGGCTTGACCTTTCATAAGTGGAGACAAAA
TAAAGCGCCCATAATAAAGACGCTTACTGTCTGCTCTTGATTCAACACAC
TTCCACTGTAGTGTCCGAGTAGATACTTTTACTTTCTCTCGAACCATAGT
AATATTATTTGTCAGATCATTGAGTCATTTATTTCTCTTGAAATCTCTTC
AATGTTTATTTCTACACCCGTCTTTTTTTAGGGGGTCTGCAACCATTGTG
TGGCATAGGGGTTACATCCCGTACGAAATTTAAAAGGATACCGCTTCTAC
GAATAGCTCGTAATGCCGCATCTCTTCCGAGACCAGGACCCTTTATCATG
ACTTCTGCTCGTTGCATACCTTGATCCGCTACTGCTCGAATAGCATTTCC
TGCTGCGGTTTGAGCAGCAAAAGGCGTACCTCTTCTTGTACCCCTGAATC
CACAAGTACCGGCCGAGGACCAAGAAATTACCCGACCCCGGACATCTGTA
ACAGTCACAATGGTGTTGTTGAAACTTGCTTGAACATGAATAACGCCCTT
TGGTATTCGACGTCCACTTTTACGTGAACCGATCCGTCCCGGCCTACGTG
AACCACTTCGTGGTGGAGATTTTGCCATATTTGATCATTT
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