EY702398

Overview
NameEY702398
Unique NameEY702398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702398_ssr774 microsatellite EY702398_ssr774:774..785. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702398 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.097e-56
Identity = 112/193 (58.03%), Postives = 139/193 (72.02%), Query Frame = 3
Query:   12 AYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTA-SSMPSGTTSFARLQWSDGKHVVGSPIAFSWT 587
            AY T  +GK LLDI+TG+PSTPFD GAGHV P  A +PGL+YD T +DYL FLCAL+Y+S QI+  + R++ C  SK+YS+ D+NYPSF+V  +       GVGA    KYTRT+T+VG   TY V V+S++T VKI VEP  L+F    EKKSY VTFT  SS PSG+ SF  ++WSDGKHVVGSP+A SWT
Sbjct:  575 AYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVD-------GVGA---YKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISWT 757          
BLAST of EY702398 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.146e-21
Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 3
Query:   66 PSTPFDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFS 581
            P   F +G+GHV+P+ A+ PGLVYDA   DY+ FLC   Y++  +++ T    AC S  T  + D+NYPSF +    +         T    + RTLT+V    +   ++ S    + I V P  LSF+   ++KS+ +T   S    G    A L WSDG H V SPI  +
Sbjct:  567 PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQ--------TFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI--KGFVVSASLVWSDGVHYVRSPITIT 728          
BLAST of EY702398 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.982e-17
Identity = 56/168 (33.33%), Postives = 80/168 (47.62%), Query Frame = 3
Query:   78 FDFGAGHVDPVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLG--DVNYPSFSVPFETASGTWGGVGATSTVK-YTRTLTNVGTPTTYMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPI 572
            F +G G ++P  A  PGLVYD     Y+ FLC   Y++  +           SS    LG   +NYP+  +   +A         TST+  + R +TNVG P++   +       V+I VEP+SLSFS+  +K+S+ V   A  M  G      L W   +H V SPI
Sbjct:  582 FAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAK--------TSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPI 741          
The following BLAST results are available for this feature:
BLAST of EY702398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH1.097e-5658.03Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME1.146e-2135.47Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH4.982e-1733.33Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-E08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702398 ID=EY702398; Name=EY702398; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGGCCTACTCTACAAATGGCAATGGCAAAACCCTACTAGAC
ATTTCCACTGGACAACCATCAACGCCATTCGACTTTGGCGCTGGACATGT
AGATCCTGTAGCAGCTCTTGATCCTGGCCTTGTCTATGATGCCACTGTCC
AAGACTACCTAGACTTCCTCTGTGCCTTAGACTACAGCTCGTTTCAGATT
AAGCAAGCTACAAACAGAGACTTCGCCTGCCTGTCAAGCAAAACATACAG
CTTGGGTGATGTTAATTACCCATCTTTCTCTGTTCCATTTGAAACAGCAT
CAGGTACATGGGGTGGTGTTGGCGCAACAAGCACTGTGAAATACACTAGG
ACTCTAACAAATGTGGGCACTCCGACGACATACATGGTATCTGTGTCTTC
ACAATCTACGTCAGTGAAGATCTTAGTTGAACCAGAATCACTGAGCTTCA
GTAGACAATATGAGAAAAAGAGTTATGTGGTGACATTCACGGCTAGTTCT
ATGCCGTCTGGTACTACCAGCTTTGCTCGTCTCCAGTGGTCTGATGGGAA
ACATGTGGTTGGAAGTCCAATAGCTTTCAGCTGGACATGATCATGGTAGC
ATTTAATAATTGGTCTAATAACTAAATATAGGCCACAAAGTCCCAGAATC
AAAGTCCCAGACTTAAATAGTGCTTCACTCAGTCTATTGGACATTTGTGT
GGCACCTTTGCTTGTGTTCAGCAACTGAGTAAGCACAGCCACTAGCTTTT
GTATCAGTAGATTGAAAAGGAATAATAAATAAATAAAACACCGTACATAA
AAACATGTAAGAGATTGCTATTTGAAATCAATGACATTAGTTTCACATCT
TTCTACAGTCAGATT
back to top