CX078279

Overview
NameCX078279
Unique NameCX078279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4933 contig Csv1_Contig4933:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_ARATH (DNA ligase 1 OS=Arabidopsis thaliana GN=At1g08130 PE=2 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 1.983e-83
Identity = 151/214 (70.56%), Postives = 175/214 (81.78%), Query Frame = 1
Query:  157 CIAMANRFFRNN*EFVESIFMIHLRKSLD-------FFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            CI   +  + N  + ++    I   K  +       +FQFAT +TS D+DEIQKFLDA+VD  CEGLIIKT+D DATYEP+KRS NWLKLKKDY++SIGDS+DLVPIAAFHGRGKRTGVYGAFLLACYD + EEFQSICKIGTGFS+AML+ERSSSLRS+VI  P+ YYR  D+++PDVWFEPTEVWEVKAADLTISPVHRAA G+VDPDKGIS
Sbjct:  532 CIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFATAVTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGIS 745          

HSP 2 Score: 133.265 bits (334), Expect = 1.481e-30
Identity = 60/82 (73.17%), Postives = 76/82 (92.68%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248
            SV+SF+LDCE+VA+DREK+KILPFQ LSTRARKNV+++DIKV VCI+AFD+LY NGQ L+QE L++RRE LY+SFEE+PG+F
Sbjct:  488 SVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYF 569          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_XENLA (DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.240e-79
Identity = 104/177 (58.76%), Postives = 137/177 (77.40%), Query Frame = 1
Query:  247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            F FAT +   + DEI +FLD ++  SCEGL++KT+++DATYE +KRS NWLKLKKDY+E +GD+LDLV I A+ G+GKRTG+YG FLLA YD  +EE+Q+ICKIGTGF++  LE+  + L+  VI  PR YYR+     PD WF+P +VWEVK ADL+ISPVH+AA+G+V+  KGIS
Sbjct:  846 FMFATYMDKSNTDEISEFLDQSIKDSCEGLMVKTLEQDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRTGIYGGFLLASYDEESEEYQTICKIGTGFTDDDLEKHYNFLKDHVIENPRSYYRWDSATEPDHWFDPVQVWEVKCADLSISPVHKAALGLVEDQKGIS 1022          

HSP 2 Score: 90.1225 bits (222), Expect = 5.240e-79
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248
            SV+S +LD E VA D EK++I PFQ L+TR RK+V  S+IKV VC+YAFD+LY NG+ L++E    RR+ L DSF E  G F
Sbjct:  765 SVKSCILDTEAVAGDAEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDMLYLNGESLVKEPFAKRRQLLRDSFLETEGQF 846          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_HUMAN (DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.518e-78
Identity = 104/177 (58.76%), Postives = 137/177 (77.40%), Query Frame = 1
Query:  247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            F FAT+L + D+++I +FL+ +V  SCEGL++KT+D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD ++EE Q+ICK+GTGFS+  LEE   SL++ V+P PRPY R    + PD W +P+ VWEVK ADL++SP++ AA G+VD DKGIS
Sbjct:  693 FVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGIS 869          

HSP 2 Score: 92.4337 bits (228), Expect = 1.518e-78
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248
            SV SF+LD E VA+DREK++I PFQ L+TR RK V  S+I+V VC+YAFD++Y NG+ L++E L  RR+ L ++F E  G F
Sbjct:  612 SVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEF 693          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_MOUSE (DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 8.160e-77
Identity = 102/177 (57.63%), Postives = 135/177 (76.27%), Query Frame = 1
Query:  247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            F F T+L + D ++I +FL+ +V  SCEGL++KT+D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD  +EE Q+ICK+GTGFS+  LEE   SL++ V+P PRPY R    ++PD W +P+ VWEVK ADL++SP++ AA G+VD +KGIS
Sbjct:  691 FVFTTSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPTPRPYVRIDGAVAPDHWLDPSIVWEVKCADLSLSPIYPAARGLVDKEKGIS 867          

HSP 2 Score: 91.2781 bits (225), Expect = 8.160e-77
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248
            SV SF+LD E VA+DREK++I PFQ L+TR RK V  S+I+V VC+YAFD++Y NG+ L+++ L  RR+ L ++F E  G F
Sbjct:  610 SVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVRQPLSRRRQLLRENFVETEGEF 691          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_RAT (DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.064e-76
Identity = 101/177 (57.06%), Postives = 137/177 (77.40%), Query Frame = 1
Query:  247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            F FAT+L + D+++I +FL+ +V  SCEGL++KT+D DATYE +KRS NWLKLKKDY+E +GD+LDLV I A+ GRGKR G YG FLLA YD  +EE  +ICK+GTGFS+  LEE   ++++ ++P PRPY R    ++P+ W +P+ VWEVK ADLT+SP++RAA G+VD +KGIS
Sbjct:  693 FVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKRPGRYGGFLLAAYDEESEELAAICKLGTGFSDEELEEHHQNMQALLLPTPRPYVRIDGAVAPNHWLDPSIVWEVKCADLTLSPIYRAARGMVDKEKGIS 869          

HSP 2 Score: 90.5077 bits (223), Expect = 1.064e-76
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248
            SV SF+LD E VA+DREK++I PFQ L+TR RK V  S+I+V VC+YAFD++Y NG+ L ++ L  RR+ L ++F E  G F
Sbjct:  612 SVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETEGEF 693          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_SCHPO (DNA ligase 1 OS=Schizosaccharomyces pombe GN=cdc17 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 8.153e-74
Identity = 98/180 (54.44%), Postives = 130/180 (72.22%), Query Frame = 1
Query:  247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDR-DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTIS--PDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            F FA       ++ I++FL+ +V  SCEGL++K ++  D+ YEPSKRS +WLK+KKDY+  +GDSLDL+ I A++G+GKRT VYGAFLL CYD + E  QSICK+GTGFSE  LE   + L+  VI K + +Y  +D  +  PDVWFEP  +WEV AADL++SPV++AAIG V  DKGIS
Sbjct:  541 FTFAKHSDQKSIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHWLKVKKDYLSGVGDSLDLIVIGAYYGKGKRTSVYGAFLLGCYDPDTETVQSICKLGTGFSEEHLETFYNQLKDIVISKKKDFYAHSDVPAHQPDVWFEPKYLWEVLAADLSLSPVYKAAIGYVQEDKGIS 720          

HSP 2 Score: 100.908 bits (250), Expect = 8.153e-74
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    9 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFS 251
            RSF+LDCE V +DR++ KILPFQ L+TR RK+V + DIKV  C++AFDILY NGQPLL+  L  RR+ LY  F+   G F+
Sbjct:  462 RSFILDCEAVGWDRDENKILPFQKLATRKRKDVKIGDIKVRACLFAFDILYLNGQPLLETPLNERRKLLYSMFQPSTGDFT 542          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_DROME (DNA ligase 1 OS=Drosophila melanogaster GN=CG5602 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 4.024e-60
Identity = 103/189 (54.50%), Postives = 144/189 (76.19%), Query Frame = 1
Query:  211 IFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            + + H ++    ++FAT L + D+DE+Q+FL+ ++  +CEGL++KT+D +ATYE +KRS NWLKLKKDY+ ++GDSLDLV I  + G+G+RTG YG FLLACYD+ NEE+QSICKIGTGF++  L+  S  L   V    + YYR+  ++ PD WFEP +VWEVK ADL++SP+HRAAIG+VD ++GIS
Sbjct:  508 LLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLMVKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTGTYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSYYRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGIS 696          

HSP 2 Score: 90.5077 bits (223), Expect = 1.101e-17
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 3
Query:    6 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275
            V+S+++D EIVA+D E+++ILPFQ LSTR RKNV + +IKV VC+Y FD+LY NG  L+ + L  RR+ L + F+E  G +      + N
Sbjct:  440 VKSYIIDSEIVAWDVERKQILPFQVLSTRKRKNVDIEEIKVQVCVYIFDLLYINGTALVTKNLSERRKLLLEHFQEVEGEWKFATALDTN 529          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_DICDI (DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.997e-59
Identity = 104/177 (58.76%), Postives = 140/177 (79.10%), Query Frame = 1
Query:  247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            F FA      D+++IQ +L+ AV+ +CEGL++KT+   + YEPS+RS NWLK+KKDY++ + DSLDLVPI A++G+GKRTG YGA+LLACYD NNEEFQ++CKIGTGFS+  L   +S L+  +I +PR  +RF+D+I PDVWF P+ VWEV AADL+ISPVH AA G++DP+KGI+
Sbjct:  969 FAFAKYSNISDVNDIQSYLEEAVEGNCEGLMVKTLKEKSIYEPSRRSYNWLKIKKDYMQGMTDSLDLVPIGAWYGKGKRTGTYGAYLLACYDENNEEFQTLCKIGTGFSDEQLTTFTSQLKPHLINQPRNQFRFSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILDPNKGIA 1145          

HSP 2 Score: 103.605 bits (257), Expect = 1.257e-21
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275
            +V+SF+LDCE VA+D   +KIL FQ LSTRARK+V LS IKV VC++AFD+LY NGQ L+ E L  RREHL ++F    G F+     NI+
Sbjct:  888 NVKSFILDCEAVAFDAATKKILSFQVLSTRARKSVQLSQIKVPVCVFAFDLLYLNGQSLIDEPLIKRREHLVENFIASDGVFAFAKYSNIS 978          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_CAEEL (DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.415e-51
Identity = 97/177 (54.80%), Postives = 127/177 (71.75%), Query Frame = 1
Query:  247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            F FAT++ + D DEI  F D AV   CEGL+IKT+D +ATYE S+RS +WLK+KKDY++ +GD+LDLV + A+ G GKRTGVYG +LL CY+   EE++S+CKIGTGF++  L E+   L+ K I K   YY+F  T+ PD  F P  V+EVK AD+TISP H+AA G+ D  KGIS
Sbjct:  412 FYFATSVDTNDTDEINSFFDEAVQNKCEGLMIKTLDTEATYEISRRSHSWLKMKKDYVDGVGDTLDLVVMGAYSGVGKRTGVYGGYLLGCYNPTTEEYESVCKIGTGFTDEDLAEQYKILQDKKIDKSPSYYQFDHTLKPDDTFSPYLVFEVKCADITISPRHKAASGLTDDGKGIS 588          

HSP 2 Score: 73.559 bits (179), Expect = 1.393e-12
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    6 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275
            V SF++D E+VA D E   ILPFQ LSTR RKN +  D  V V ++ FD+LY NG+PL+++ LR RRE L  +F++  G F    + + N
Sbjct:  334 VTSFIVDAEVVAID-EAGLILPFQVLSTRKRKNAT-DDNGVKVVVFLFDLLYFNGEPLVRKPLRKRRELLRTNFKKIDGSFYFATSVDTN 421          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_YEAST (DNA ligase 1 OS=Saccharomyces cerevisiae GN=CDC9 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.891e-50
Identity = 95/178 (53.37%), Postives = 131/178 (73.60%), Query Frame = 1
Query:  247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDR-DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            FQ+AT +T+ +LDE+QKFLD +V+ SCEGL++K ++  ++ YEPSKRS NWLKLKKDY+E +GDSLDL  + A++GRGKRTG YG FLL CY+ +  EF++ CKIGTGFS+ ML+     L   +I  P+  + F  +  PDVWFEPT ++EV  ADL++SP+++A  G    DKG+S
Sbjct:  544 FQYATQITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKDYLEGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGEFETCCKIGTGFSDEMLQLLHDRLTPTIIDGPKATFVFDSSAEPDVWFEPTTLFEVLTADLSLSPIYKA--GSATFDKGVS 719          

HSP 2 Score: 88.9669 bits (219), Expect = 3.203e-17
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275
            + ++ +LDCE VA+D+++ KILPFQ LSTR RK+V L+D+KV VC++AFDIL  N + L+ + L+ RRE+L    +  PG F        N
Sbjct:  463 TTKNLILDCEAVAWDKDQGKILPFQVLSTRKRKDVELNDVKVKVCLFAFDILCYNDERLINKSLKERREYLTKVTKVVPGEFQYATQITTN 553          
The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
DNLI1_ARATH1.983e-8370.56DNA ligase 1 OS=Arabidopsis thaliana GN=At1g08130 ... [more]
DNLI1_XENLA5.240e-7958.76DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1[more]
DNLI1_HUMAN1.518e-7858.76DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1[more]
DNLI1_MOUSE8.160e-7757.63DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2[more]
DNLI1_RAT1.064e-7657.06DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=... [more]
DNLI1_SCHPO8.153e-7454.44DNA ligase 1 OS=Schizosaccharomyces pombe GN=cdc17... [more]
DNLI1_DROME4.024e-6054.50DNA ligase 1 OS=Drosophila melanogaster GN=CG5602 ... [more]
DNLI1_DICDI1.997e-5958.76DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 P... [more]
DNLI1_CAEEL3.415e-5154.80DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 PE... [more]
DNLI1_YEAST2.891e-5053.37DNA ligase 1 OS=Saccharomyces cerevisiae GN=CDC9 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bp
CTTCTGTAAGATCATTTGTTCTGGACTGTGAAATTGTTGCTTACGATCGG
GAAAAACAGAAAATCTTGCCCTTCCAGACCCTTAGTACTCGAGCTCGTAA
AAATGTCTCTCTCAGTGACATCAAGGTTGATGTCTGCATATATGCTTTTG
ACATTTTGTATCGCAATGGCCAACCGCTTCTTCAGGAACAACTGAGAGTT
CGTAGAGAGCATCTTTATGATTCATTTGAGGAAGAGCCTGGATTTTTTTC
AGTTTGCAACAACTTTAACATCAATTGATCTTGATGAAATACAAAAGTTT
CTAGATGCTGCTGTTGATGCAAGTTGTGAGGGTCTAATTATCAAAACAAT
GGATCGAGATGCTACATATGAGCCTTCAAAGCGATCGCTTAACTGGCTAA
AATTAAAGAAAGATTACATTGAGAGTATTGGAGACTCGCTGGATTTAGTA
CCCATTGCTGCATTTCATGGCCGTGGGAAACGTACAGGTGTTTATGGTGC
CTTTCTGTTGGCATGTTATGACAGCAATAATGAAGAATTTCAAAGCATAT
GTAAAATAGGCACTGGATTTTCTGAAGCGATGCTTGAAGAACGTTCTTCC
AGTCTCCGTTCTAAAGTTATACCCAAACCAAGGCCGTACTACCGGTTTGC
TGATACTATCAGTCCAGATGTATGGTTCGAGCCAACAGAGGTTTGGGAGG
TGAAAGCTGCGGACTTGACTATTAGCCCTGTTCATCGTGCTGCCATTGGT
GTTGTGGATCCTGATAAGGGCATTTCT
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