CX078279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_ARATH (DNA ligase 1 OS=Arabidopsis thaliana GN=At1g08130 PE=2 SV=2) HSP 1 Score: 308.916 bits (790), Expect = 1.983e-83 Identity = 151/214 (70.56%), Postives = 175/214 (81.78%), Query Frame = 1 Query: 157 CIAMANRFFRNN*EFVESIFMIHLRKSLD-------FFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 CI + + N + ++ I K + +FQFAT +TS D+DEIQKFLDA+VD CEGLIIKT+D DATYEP+KRS NWLKLKKDY++SIGDS+DLVPIAAFHGRGKRTGVYGAFLLACYD + EEFQSICKIGTGFS+AML+ERSSSLRS+VI P+ YYR D+++PDVWFEPTEVWEVKAADLTISPVHRAA G+VDPDKGIS Sbjct: 532 CIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFATAVTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGIS 745 HSP 2 Score: 133.265 bits (334), Expect = 1.481e-30 Identity = 60/82 (73.17%), Postives = 76/82 (92.68%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248 SV+SF+LDCE+VA+DREK+KILPFQ LSTRARKNV+++DIKV VCI+AFD+LY NGQ L+QE L++RRE LY+SFEE+PG+F Sbjct: 488 SVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYF 569
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_XENLA (DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 5.240e-79 Identity = 104/177 (58.76%), Postives = 137/177 (77.40%), Query Frame = 1 Query: 247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 F FAT + + DEI +FLD ++ SCEGL++KT+++DATYE +KRS NWLKLKKDY+E +GD+LDLV I A+ G+GKRTG+YG FLLA YD +EE+Q+ICKIGTGF++ LE+ + L+ VI PR YYR+ PD WF+P +VWEVK ADL+ISPVH+AA+G+V+ KGIS Sbjct: 846 FMFATYMDKSNTDEISEFLDQSIKDSCEGLMVKTLEQDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRTGIYGGFLLASYDEESEEYQTICKIGTGFTDDDLEKHYNFLKDHVIENPRSYYRWDSATEPDHWFDPVQVWEVKCADLSISPVHKAALGLVEDQKGIS 1022 HSP 2 Score: 90.1225 bits (222), Expect = 5.240e-79 Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248 SV+S +LD E VA D EK++I PFQ L+TR RK+V S+IKV VC+YAFD+LY NG+ L++E RR+ L DSF E G F Sbjct: 765 SVKSCILDTEAVAGDAEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDMLYLNGESLVKEPFAKRRQLLRDSFLETEGQF 846
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_HUMAN (DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.518e-78 Identity = 104/177 (58.76%), Postives = 137/177 (77.40%), Query Frame = 1 Query: 247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 F FAT+L + D+++I +FL+ +V SCEGL++KT+D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD ++EE Q+ICK+GTGFS+ LEE SL++ V+P PRPY R + PD W +P+ VWEVK ADL++SP++ AA G+VD DKGIS Sbjct: 693 FVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGIS 869 HSP 2 Score: 92.4337 bits (228), Expect = 1.518e-78 Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248 SV SF+LD E VA+DREK++I PFQ L+TR RK V S+I+V VC+YAFD++Y NG+ L++E L RR+ L ++F E G F Sbjct: 612 SVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEF 693
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_MOUSE (DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 8.160e-77 Identity = 102/177 (57.63%), Postives = 135/177 (76.27%), Query Frame = 1 Query: 247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 F F T+L + D ++I +FL+ +V SCEGL++KT+D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD +EE Q+ICK+GTGFS+ LEE SL++ V+P PRPY R ++PD W +P+ VWEVK ADL++SP++ AA G+VD +KGIS Sbjct: 691 FVFTTSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPTPRPYVRIDGAVAPDHWLDPSIVWEVKCADLSLSPIYPAARGLVDKEKGIS 867 HSP 2 Score: 91.2781 bits (225), Expect = 8.160e-77 Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248 SV SF+LD E VA+DREK++I PFQ L+TR RK V S+I+V VC+YAFD++Y NG+ L+++ L RR+ L ++F E G F Sbjct: 610 SVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVRQPLSRRRQLLRENFVETEGEF 691
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_RAT (DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 1.064e-76 Identity = 101/177 (57.06%), Postives = 137/177 (77.40%), Query Frame = 1 Query: 247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 F FAT+L + D+++I +FL+ +V SCEGL++KT+D DATYE +KRS NWLKLKKDY+E +GD+LDLV I A+ GRGKR G YG FLLA YD +EE +ICK+GTGFS+ LEE ++++ ++P PRPY R ++P+ W +P+ VWEVK ADLT+SP++RAA G+VD +KGIS Sbjct: 693 FVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKRPGRYGGFLLAAYDEESEELAAICKLGTGFSDEELEEHHQNMQALLLPTPRPYVRIDGAVAPNHWLDPSIVWEVKCADLTLSPIYRAARGMVDKEKGIS 869 HSP 2 Score: 90.5077 bits (223), Expect = 1.064e-76 Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 248 SV SF+LD E VA+DREK++I PFQ L+TR RK V S+I+V VC+YAFD++Y NG+ L ++ L RR+ L ++F E G F Sbjct: 612 SVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETEGEF 693
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_SCHPO (DNA ligase 1 OS=Schizosaccharomyces pombe GN=cdc17 PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 8.153e-74 Identity = 98/180 (54.44%), Postives = 130/180 (72.22%), Query Frame = 1 Query: 247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDR-DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTIS--PDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 F FA ++ I++FL+ +V SCEGL++K ++ D+ YEPSKRS +WLK+KKDY+ +GDSLDL+ I A++G+GKRT VYGAFLL CYD + E QSICK+GTGFSE LE + L+ VI K + +Y +D + PDVWFEP +WEV AADL++SPV++AAIG V DKGIS Sbjct: 541 FTFAKHSDQKSIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHWLKVKKDYLSGVGDSLDLIVIGAYYGKGKRTSVYGAFLLGCYDPDTETVQSICKLGTGFSEEHLETFYNQLKDIVISKKKDFYAHSDVPAHQPDVWFEPKYLWEVLAADLSLSPVYKAAIGYVQEDKGIS 720 HSP 2 Score: 100.908 bits (250), Expect = 8.153e-74 Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 3 Query: 9 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFS 251 RSF+LDCE V +DR++ KILPFQ L+TR RK+V + DIKV C++AFDILY NGQPLL+ L RR+ LY F+ G F+ Sbjct: 462 RSFILDCEAVGWDRDENKILPFQKLATRKRKDVKIGDIKVRACLFAFDILYLNGQPLLETPLNERRKLLYSMFQPSTGDFT 542
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_DROME (DNA ligase 1 OS=Drosophila melanogaster GN=CG5602 PE=1 SV=2) HSP 1 Score: 231.491 bits (589), Expect = 4.024e-60 Identity = 103/189 (54.50%), Postives = 144/189 (76.19%), Query Frame = 1 Query: 211 IFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 + + H ++ ++FAT L + D+DE+Q+FL+ ++ +CEGL++KT+D +ATYE +KRS NWLKLKKDY+ ++GDSLDLV I + G+G+RTG YG FLLACYD+ NEE+QSICKIGTGF++ L+ S L V + YYR+ ++ PD WFEP +VWEVK ADL++SP+HRAAIG+VD ++GIS Sbjct: 508 LLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLMVKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTGTYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSYYRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGIS 696 HSP 2 Score: 90.5077 bits (223), Expect = 1.101e-17 Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 3 Query: 6 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275 V+S+++D EIVA+D E+++ILPFQ LSTR RKNV + +IKV VC+Y FD+LY NG L+ + L RR+ L + F+E G + + N Sbjct: 440 VKSYIIDSEIVAWDVERKQILPFQVLSTRKRKNVDIEEIKVQVCVYIFDLLYINGTALVTKNLSERRKLLLEHFQEVEGEWKFATALDTN 529
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_DICDI (DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 1.997e-59 Identity = 104/177 (58.76%), Postives = 140/177 (79.10%), Query Frame = 1 Query: 247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 F FA D+++IQ +L+ AV+ +CEGL++KT+ + YEPS+RS NWLK+KKDY++ + DSLDLVPI A++G+GKRTG YGA+LLACYD NNEEFQ++CKIGTGFS+ L +S L+ +I +PR +RF+D+I PDVWF P+ VWEV AADL+ISPVH AA G++DP+KGI+ Sbjct: 969 FAFAKYSNISDVNDIQSYLEEAVEGNCEGLMVKTLKEKSIYEPSRRSYNWLKIKKDYMQGMTDSLDLVPIGAWYGKGKRTGTYGAYLLACYDENNEEFQTLCKIGTGFSDEQLTTFTSQLKPHLINQPRNQFRFSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILDPNKGIA 1145 HSP 2 Score: 103.605 bits (257), Expect = 1.257e-21 Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275 +V+SF+LDCE VA+D +KIL FQ LSTRARK+V LS IKV VC++AFD+LY NGQ L+ E L RREHL ++F G F+ NI+ Sbjct: 888 NVKSFILDCEAVAFDAATKKILSFQVLSTRARKSVQLSQIKVPVCVFAFDLLYLNGQSLIDEPLIKRREHLVENFIASDGVFAFAKYSNIS 978
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_CAEEL (DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 PE=2 SV=2) HSP 1 Score: 201.83 bits (512), Expect = 3.415e-51 Identity = 97/177 (54.80%), Postives = 127/177 (71.75%), Query Frame = 1 Query: 247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 F FAT++ + D DEI F D AV CEGL+IKT+D +ATYE S+RS +WLK+KKDY++ +GD+LDLV + A+ G GKRTGVYG +LL CY+ EE++S+CKIGTGF++ L E+ L+ K I K YY+F T+ PD F P V+EVK AD+TISP H+AA G+ D KGIS Sbjct: 412 FYFATSVDTNDTDEINSFFDEAVQNKCEGLMIKTLDTEATYEISRRSHSWLKMKKDYVDGVGDTLDLVVMGAYSGVGKRTGVYGGYLLGCYNPTTEEYESVCKIGTGFTDEDLAEQYKILQDKKIDKSPSYYQFDHTLKPDDTFSPYLVFEVKCADITISPRHKAASGLTDDGKGIS 588 HSP 2 Score: 73.559 bits (179), Expect = 1.393e-12 Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 3 Query: 6 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275 V SF++D E+VA D E ILPFQ LSTR RKN + D V V ++ FD+LY NG+PL+++ LR RRE L +F++ G F + + N Sbjct: 334 VTSFIVDAEVVAID-EAGLILPFQVLSTRKRKNAT-DDNGVKVVVFLFDLLYFNGEPLVRKPLRKRRELLRTNFKKIDGSFYFATSVDTN 421
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_YEAST (DNA ligase 1 OS=Saccharomyces cerevisiae GN=CDC9 PE=1 SV=2) HSP 1 Score: 198.749 bits (504), Expect = 2.891e-50 Identity = 95/178 (53.37%), Postives = 131/178 (73.60%), Query Frame = 1 Query: 247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDR-DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 FQ+AT +T+ +LDE+QKFLD +V+ SCEGL++K ++ ++ YEPSKRS NWLKLKKDY+E +GDSLDL + A++GRGKRTG YG FLL CY+ + EF++ CKIGTGFS+ ML+ L +I P+ + F + PDVWFEPT ++EV ADL++SP+++A G DKG+S Sbjct: 544 FQYATQITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKDYLEGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGEFETCCKIGTGFSDEMLQLLHDRLTPTIIDGPKATFVFDSSAEPDVWFEPTTLFEVLTADLSLSPIYKA--GSATFDKGVS 719 HSP 2 Score: 88.9669 bits (219), Expect = 3.203e-17 Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275 + ++ +LDCE VA+D+++ KILPFQ LSTR RK+V L+D+KV VC++AFDIL N + L+ + L+ RRE+L + PG F N Sbjct: 463 TTKNLILDCEAVAWDKDQGKILPFQVLSTRKRKDVELNDVKVKVCLFAFDILCYNDERLINKSLKERREYLTKVTKVVPGEFQYATQITTN 553 The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bpback to top |