CX078278

Overview
NameCX078278
Unique NameCX078278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4933 contig Csv1_Contig4933:354..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_ARATH (DNA ligase 1 OS=Arabidopsis thaliana GN=At1g08130 PE=2 SV=2)

HSP 1 Score: 315.079 bits (806), Expect = 2.940e-85
Identity = 148/185 (80.00%), Postives = 170/185 (91.89%), Query Frame = -2
Query:  249 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 803
            DATYEP+KRS NWLKLKKDY++SIGDS+DLVPIAAFHGRGKRTGVYGAFLLACYD + EEFQSICKIGTGFS+AML+ERSSSLRS+VI  P+ YYR  D+++PDVWFEPTEVWEVKAADLTISPVHRAA G+VDPDKGISLRFPRL+RVREDK PE+A+SSEQ+A++Y AQK NHP+N+   +DD
Sbjct:  606 DATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQIADLYQAQKHNHPSNEVKGDDD 790          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_DICDI (DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.834e-65
Identity = 112/182 (61.54%), Postives = 149/182 (81.87%), Query Frame = -2
Query:  249 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 794
            YEPS+RS NWLK+KKDY++ + DSLDLVPI A++G+GKRTG YGA+LLACYD NNEEFQ++CKIGTGFS+  L   +S L+  +I +PR  +RF+D+I PDVWF P+ VWEV AADL+ISPVH AA G++DP+KGI+LRFPR IR+R DK+PE A+SS+QV +MY  QK+N  +++ + +D+
Sbjct: 1009 YEPSRRSYNWLKIKKDYMQGMTDSLDLVPIGAWYGKGKRTGTYGAYLLACYDENNEEFQTLCKIGTGFSDEQLTTFTSQLKPHLINQPRNQFRFSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILDPNKGIALRFPRFIRIRPDKSPEDATSSDQVVDMYQNQKINSQSSKINEKDE 1190          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_XENLA (DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.122e-59
Identity = 106/187 (56.68%), Postives = 146/187 (78.07%), Query Frame = -2
Query:  249 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMY-TAQKLNHPNNQDDNEDD 806
            +DATYE +KRS NWLKLKKDY+E +GD+LDLV I A+ G+GKRTG+YG FLLA YD  +EE+Q+ICKIGTGF++  LE+  + L+  VI  PR YYR+     PD WF+P +VWEVK ADL+ISPVH+AA+G+V+  KGISLRFPR +R+R+DK PE++++S QVA++Y   Q++ + ++ +  E+D
Sbjct:  882 QDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRTGIYGGFLLASYDEESEEYQTICKIGTGFTDDDLEKHYNFLKDHVIENPRSYYRWDSATEPDHWFDPVQVWEVKCADLSISPVHKAALGLVEDQKGISLRFPRFLRIRDDKKPEESTNSFQVADLYRKQQQIQNTSSTEKAEED 1068          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_HUMAN (DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.620e-59
Identity = 110/185 (59.46%), Postives = 139/185 (75.14%), Query Frame = -2
Query:  252 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ-KLNHPNNQDDNED 803
            DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD ++EE Q+ICK+GTGFS+  LEE   SL++ V+P PRPY R    + PD W +P+ VWEVK ADL++SP++ AA G+VD DKGISLRFPR IRVREDK PEQA++S QVA +Y  Q ++ +   +D   D
Sbjct:  730 DATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSD 914          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_DROME (DNA ligase 1 OS=Drosophila melanogaster GN=CG5602 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.053e-58
Identity = 103/171 (60.23%), Postives = 132/171 (77.19%), Query Frame = -2
Query:  291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803
            +ATYE +KRS NWLKLKKDY+ ++GDSLDLV I  + G+G+RTG YG FLLACYD+ NEE+QSICKIGTGF++  L+  S  L   V    + YYR+  ++ PD WFEP +VWEVK ADL++SP+HRAAIG+VD ++GISLRFPR IR+R+DK  E A+ + QVA MY +Q
Sbjct:  557 EATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTGTYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSYYRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFPRFIRIRDDKNSENATDANQVAHMYQSQ 727          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_RAT (DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.375e-58
Identity = 107/185 (57.84%), Postives = 137/185 (74.05%), Query Frame = -2
Query:  249 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 803
            DATYE +KRS NWLKLKKDY+E +GD+LDLV I A+ GRGKR G YG FLLA YD  +EE  +ICK+GTGFS+  LEE   ++++ ++P PRPY R    ++P+ W +P+ VWEVK ADLT+SP++RAA G+VD +KGISLRFPR IRVREDK PEQA++S+QVA +Y  Q         D + D
Sbjct:  730 DATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKRPGRYGGFLLAAYDEESEELAAICKLGTGFSDEELEEHHQNMQALLLPTPRPYVRIDGAVAPNHWLDPSIVWEVKCADLTLSPIYRAARGMVDKEKGISLRFPRFIRVREDKQPEQATTSDQVASLYRKQSQIQNQQSSDLDSD 914          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_MOUSE (DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.375e-58
Identity = 108/185 (58.38%), Postives = 136/185 (73.51%), Query Frame = -2
Query:  249 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 803
            DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G YG FLLA YD  +EE Q+ICK+GTGFS+  LEE   SL++ V+P PRPY R    ++PD W +P+ VWEVK ADL++SP++ AA G+VD +KGISLRFPR IRVR+DK PEQA++S QVA +Y  Q         D + D
Sbjct:  728 DATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPTPRPYVRIDGAVAPDHWLDPSIVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVRKDKQPEQATTSNQVASLYRKQSQIQNQQSSDLDSD 912          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_SCHPO (DNA ligase 1 OS=Schizosaccharomyces pombe GN=cdc17 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.090e-55
Identity = 105/173 (60.69%), Postives = 133/173 (76.88%), Query Frame = -2
Query:  291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTIS--PDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803
            D+ YEPSKRS +WLK+KKDY+  +GDSLDL+ I A++G+GKRT VYGAFLL CYD + E  QSICK+GTGFSE  LE   + L+  VI K + +Y  +D  +  PDVWFEP  +WEV AADL++SPV++AAIG V  DKGISLRFPR IR+REDK+ E A++SEQV+E Y +Q
Sbjct:  579 DSHYEPSKRSRHWLKVKKDYLSGVGDSLDLIVIGAYYGKGKRTSVYGAFLLGCYDPDTETVQSICKLGTGFSEEHLETFYNQLKDIVISKKKDFYAHSDVPAHQPDVWFEPKYLWEVLAADLSLSPVYKAAIGYVQEDKGISLRFPRFIRIREDKSWEDATTSEQVSEFYRSQ 751          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_CAEEL (DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.628e-51
Identity = 96/172 (55.81%), Postives = 127/172 (73.84%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            +ATYE S+RS +WLK+KKDY++ +GD+LDLV + A+ G GKRTGVYG +LL CY+   EE++S+CKIGTGF++  L E+   L+ K I K   YY+F  T+ PD  F P  V+EVK AD+TISP H+AA G+ D  KGISLRFPR +R+R+DK  + A+SSEQV EMY  Q+
Sbjct:  449 EATYEISRRSHSWLKMKKDYVDGVGDTLDLVVMGAYSGVGKRTGVYGGYLLGCYNPTTEEYESVCKIGTGFTDEDLAEQYKILQDKKIDKSPSYYQFDHTLKPDDTFSPYLVFEVKCADITISPRHKAASGLTDDGKGISLRFPRFLRIRDDKNSDDATSSEQVLEMYKNQE 620          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_YEAST (DNA ligase 1 OS=Saccharomyces cerevisiae GN=CDC9 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.239e-50
Identity = 93/171 (54.39%), Postives = 124/171 (72.51%), Query Frame = -2
Query:  291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803
            ++ YEPSKRS NWLKLKKDY+E +GDSLDL  + A++GRGKRTG YG FLL CY+ +  EF++ CKIGTGFS+ ML+     L   +I  P+  + F  +  PDVWFEPT ++EV  ADL++SP+++A  G    DKG+SLRFPR +R+REDK  E A+SS+Q+ E+Y  Q
Sbjct:  582 ESHYEPSKRSRNWLKLKKDYLEGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGEFETCCKIGTGFSDEMLQLLHDRLTPTIIDGPKATFVFDSSAEPDVWFEPTTLFEVLTADLSLSPIYKA--GSATFDKGVSLRFPRFLRIREDKGVEDATSSDQIVELYENQ 750          
The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DNLI1_ARATH2.940e-8580.00DNA ligase 1 OS=Arabidopsis thaliana GN=At1g08130 ... [more]
DNLI1_DICDI9.834e-6561.54DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 P... [more]
DNLI1_XENLA2.122e-5956.68DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1[more]
DNLI1_HUMAN3.620e-5959.46DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1[more]
DNLI1_DROME1.053e-5860.23DNA ligase 1 OS=Drosophila melanogaster GN=CG5602 ... [more]
DNLI1_RAT1.375e-5857.84DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=... [more]
DNLI1_MOUSE1.375e-5858.38DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2[more]
DNLI1_SCHPO1.090e-5560.69DNA ligase 1 OS=Schizosaccharomyces pombe GN=cdc17... [more]
DNLI1_CAEEL3.628e-5155.81DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 PE... [more]
DNLI1_YEAST5.239e-5054.39DNA ligase 1 OS=Saccharomyces cerevisiae GN=CDC9 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTTGAGATACTCAAAATCCAATTAGGATTAAATTTA
GAATGAAAATTATGACTCCTATACAGTATATCCAGGACCTTTCACGTCCA
GTTGACCACTAATGATGATAGGAATCATACATAAGATTTTTGGTTCTAAA
ACAGTTCTGATCAGATACATGGATTTGTGCAACAACCCAGCTGAATTTTA
CAAGAAAAGATCTTCAAAAATGAATGCAGCTTGAGATCCAGGCCTTCAAT
CATCTTCATTGTCATCTTGATTGTTTGGATGATTGAGTTTTTGAGCAGTA
TACATCTCTGCCACCTGCTCAGATGATGAAGCCTGCTCTGGGGTCTTGTC
TTCTCGAACACGAATTAGGCGAGGAAACCGGAGAGAAATGCCCTTATCAG
GATCCACAACACCAATGGCAGCACGATGAACAGGGCTAATAGTCAAGTCC
GCAGCTTTCACCTCCCAAACCTCTGTTGGCTCGAACCATACATCTGGACT
GATAGTATCAGCAAACCGGTAGTACGGCCTTGGTTTGGGTATAACTTTAG
AACGGAGACTGGAAGAACGTTCTTCAAGCATCGCTTCAGAAAATCCAGTG
CCTATTTTACATATGCTTTGAAATTCTTCATTATTGCTGTCATAACATGC
CAACAGAAAGGCACCATAAACACCTGTACGTTTCCCACGGCCATGAAATG
CAGCAATGGGTACTAAATCCAGCGAGTCTCCAATACTCTCAATGTAATCT
TTCTTTAATTTTAGCCAGTTAAGCGATCGCTTTGAAGGCTCATATGTAGC
ATCTCGA
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