CX078277

Overview
NameCX078277
Unique NameCX078277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12921 contig Csv1_Contig12921:448..1250. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA1_RAT (Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.056e-26
Identity = 69/203 (33.99%), Postives = 99/203 (48.77%), Query Frame = 1
Query:  175 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            +PR   +H+ +S  E E + +LA P + ++TV D +TGK   ++ R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  334 KPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA1_CHICK (Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.801e-26
Identity = 70/203 (34.48%), Postives = 98/203 (48.28%), Query Frame = 1
Query:  175 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            +PR   + + +S EE E +  LA P + ++TV D +TGK   +  R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++ P    D S+ H  CPV+ GNKW S KW+
Sbjct:  316 KPRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFPSGEGDYSTRHAACPVLVGNKWVSNKWL 499          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA2_CAEEL (Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.241e-26
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 1
Query:  157 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            VE++ ++P A ++ N +   E E +  LA+P ++++TV +S TG+ + +  R S   +L                DFT L     E LQV +Y  G  Y+PHFD+   E    F T N G R+ATVL Y+S  E GG TVF             N L      G ++ P   DAL +++++ D   D  + H  CPV+ G KW S KWI
Sbjct:  318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGNRIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNLRRDGEGDLRTRHAACPVLLGVKWVSNKWI 507          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA1_PONAB (Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 67/203 (33.00%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  175 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA1_MOUSE (Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 67/203 (33.00%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  175 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA1_HUMAN (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.397e-25
Identity = 67/203 (33.00%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  175 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA1_BOVIN (Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.568e-25
Identity = 67/203 (33.00%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  175 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  334 KPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVLAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA2_CHICK (Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.208e-22
Identity = 70/210 (33.33%), Postives = 101/210 (48.10%), Query Frame = 1
Query:  172 WE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI--RVNEY 786
            W+ P    Y++ +S EE E +  LA P + ++TV D  TG    +  R S  ++L                  T L ++  E LQV +Y  G +YEPHFD+    F++  K+ G R+AT L Y+SDVE GG TVFP+                    G +I PK G A+ ++++      D  + H  CPV+ G KW S KW   R NE+
Sbjct:  334 WDSPHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNYMSDVEAGGATVFPDF-------------------GAAIWPKKGTAVFWYNLFRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGNEF 524          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA1_CAEEL (Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.832e-22
Identity = 67/217 (30.88%), Postives = 100/217 (46.08%), Query Frame = 1
Query:  157 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI--RVNEYK 789
            VE+  + P A ++ + +S +E   +  LA P + ++TV DS TGK   +  R S   +L                  T L +E  E LQ+ +Y  G  Y+PHFD+   E    F +   G R+ATVL Y+S    GG TVF  A+                    +I P   DAL ++++      +P + H  CPV+ G KW S KWI  + NE++
Sbjct:  321 VEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTGNRIATVLFYMSQPSHGGGTVFTEAKS-------------------TILPTKNDALFWYNLYKQGDGNPDTRHAACPVLVGIKWVSNKWIHEKGNEFR 518          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA2_MOUSE (Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.745e-21
Identity = 66/204 (32.35%), Postives = 94/204 (46.08%), Query Frame = 1
Query:  172 WE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKW 768
            W+ P    Y++ +S EE E +  +A P + ++TV D  TG    +  R S  ++L                  T L ++  E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDVE GG TVFP+                    G +I PK G A+ ++++      D  + H  CPV+ G KW S KW
Sbjct:  335 WDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDL-------------------GAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKW 519          
The following BLAST results are available for this feature:
BLAST of CX078277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
P4HA1_RAT1.056e-2633.99Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus nor... [more]
P4HA1_CHICK1.801e-2634.48Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gal... [more]
P4HA2_CAEEL5.241e-2633.97Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabd... [more]
P4HA1_PONAB3.397e-2533.00Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abel... [more]
P4HA1_MOUSE3.397e-2533.00Prolyl 4-hydroxylase subunit alpha-1 OS=Mus muscul... [more]
P4HA1_HUMAN3.397e-2533.00Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie... [more]
P4HA1_BOVIN7.568e-2533.00Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus... [more]
P4HA2_CHICK1.208e-2233.33Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gal... [more]
P4HA1_CAEEL7.832e-2230.88Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabd... [more]
P4HA2_MOUSE1.745e-2132.35Prolyl 4-hydroxylase subunit alpha-2 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B05-D10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078277 ID=CX078277; Name=CX078277; organism=Citrus sinensis; type=EST; length=803bp
ATCATGTTCACGTTCGCGATTTTGATTCTTCTCGCGTTCGGGATCCTATC
CATGCCTAGCAGTTCCGGCGATTCGCGGAAAGCCAACGATCTCAGCTCCA
TTGTACGCAAGTCTATGGAGAGAAGTGAAGGAGATGAAGGGAGAGCAGAG
CAATGGGTTGAGGTGATCTCTTGGGAGCCTCGAGCTTTTGTTTATCATAA
TTTCTTGAGCAAGGAGGAGTGCGAGTACCTAATCAATCTTGCCACGCCTC
ATATGAGAAAGTCGACTGTTGTTGATAGTGATACTGGCAAGAGCAAAGAT
AGCAGGGTTCGGACAAGTTCTGGAACATTTCTTGCTAGAGGACGAGACAA
AATTATTAGAGATATTGAGAAAAGGATTGCAGATTTCACTTTCTTGCCTT
TAGAGAATGGAGAAGGACTTCAAGTTCTCCATTATGAAGCTGGACAAAAA
TATGAGCCTCACTTTGACTATTTCATGGATGAGTTCAACACCAAGAATGG
GGGGCAACGCATGGCTACGGTGCTAATGTACCTCTCAGACGTTGAAGAAG
GAGGTGAGACAGTCTTTCCTAATGCCCAAGGGAACATCAGTGCTGTGCCT
TGGTGGAATGAGTTATCTGAATGTGGAAAGACAGGACTTTCTATTAAACC
AAAAATGGGTGATGCATTGCTTTTCTGGAGCATGAAGCCCGATGCCGCTT
TAGATCCTTCTAGTTTGCATGGAGGTTGCCCTGTGATTAAAGGCAATAAG
TGGTCATCTACAAAATGGATACGTGTGAATGAGTATAAGGTTTGAACTAC
TGG
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