CX078276

Overview
NameCX078276
Unique NameCX078276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12921 contig Csv1_Contig12921:124..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA1_CHICK (Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.294e-22
Identity = 62/177 (35.03%), Postives = 85/177 (48.02%), Query Frame = -2
Query:  357 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 875
            + ++TV D +TGK   +  R S   +L+             I D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++ P    D S+ H  CPV+ GNKW S KW+
Sbjct:  342 LSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFPSGEGDYSTRHAACPVLVGNKWVSNKWL 499          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA1_RAT (Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.627e-21
Identity = 61/177 (34.46%), Postives = 85/177 (48.02%), Query Frame = -2
Query:  357 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 875
            + ++TV D +TGK   ++ R S   +L+             I D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  360 LSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA1_PONAB (Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20
Identity = 59/177 (33.33%), Postives = 83/177 (46.89%), Query Frame = -2
Query:  357 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 875
            +R++T+ +  TG  +    R S   +L+             I D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  360 LRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA1_MOUSE (Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20
Identity = 59/177 (33.33%), Postives = 83/177 (46.89%), Query Frame = -2
Query:  357 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 875
            +R++T+ +  TG  +    R S   +L+             I D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  360 LRRATISNPVTGALETVHYRISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA1_HUMAN (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20
Identity = 59/177 (33.33%), Postives = 83/177 (46.89%), Query Frame = -2
Query:  357 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 875
            +R++T+ +  TG  +    R S   +L+             I D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  360 LRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA2_CAEEL (Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.104e-19
Identity = 62/177 (35.03%), Postives = 85/177 (48.02%), Query Frame = -2
Query:  357 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 875
            ++++TV +S TG+ + +  R S   +L              I DFT L     E LQV +Y  G  Y+PHFD+   E    F T N G R+ATVL Y+S  E GG TVF             N L      G ++ P   DAL +++++ D   D  + H  CPV+ G KW S KWI
Sbjct:  350 LKRATVQNSKTGELEHATYRISKSAWLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGNRIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNLRRDGEGDLRTRHAACPVLLGVKWVSNKWI 507          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA1_BOVIN (Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.883e-19
Identity = 59/177 (33.33%), Postives = 83/177 (46.89%), Query Frame = -2
Query:  357 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 875
            +R++T+ +  TG  +    R S   +L+             I D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP                   + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+
Sbjct:  360 LRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVLAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWL 517          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA2_CHICK (Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.911e-18
Identity = 60/182 (32.97%), Postives = 87/182 (47.80%), Query Frame = -2
Query:  342 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI--RVNEY 875
            + ++TV D  TG    +  R S  ++L              +   T L ++  E LQV +Y  G +YEPHFD+    F++  K+ G R+AT L Y+SDVE GG TVFP+                    G +I PK G A+ ++++      D  + H  CPV+ G KW S KW   R NE+
Sbjct:  362 LARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNYMSDVEAGGATVFPDF-------------------GAAIWPKKGTAVFWYNLFRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGNEF 524          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA1_CAEEL (Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 59/185 (31.89%), Postives = 84/185 (45.41%), Query Frame = -2
Query:  339 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI--RVNEYK 875
            + ++TV DS TGK   +  R S   +L              I   T L +E  E LQ+ +Y  G  Y+PHFD+   E    F +   G R+ATVL Y+S    GG TVF  A+                    +I P   DAL ++++      +P + H  CPV+ G KW S KWI  + NE++
Sbjct:  353 LARATVHDSVTGKLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTGNRIATVLFYMSQPSHGGGTVFTEAKS-------------------TILPTKNDALFWYNLYKQGDGNPDTRHAACPVLVGIKWVSNKWIHEKGNEFR 518          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA2_MOUSE (Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.697e-17
Identity = 57/176 (32.39%), Postives = 80/176 (45.45%), Query Frame = -2
Query:  360 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKW 875
            + ++TV D  TG    +  R S  ++L              +   T L ++  E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDVE GG TVFP+                    G +I PK G A+ ++++      D  + H  CPV+ G KW S KW
Sbjct:  363 LARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDL-------------------GAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKW 519          
The following BLAST results are available for this feature:
BLAST of CX078276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
P4HA1_CHICK5.294e-2235.03Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gal... [more]
P4HA1_RAT2.627e-2134.46Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus nor... [more]
P4HA1_PONAB8.452e-2033.33Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abel... [more]
P4HA1_MOUSE8.452e-2033.33Prolyl 4-hydroxylase subunit alpha-1 OS=Mus muscul... [more]
P4HA1_HUMAN8.452e-2033.33Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie... [more]
P4HA2_CAEEL1.104e-1935.03Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabd... [more]
P4HA1_BOVIN1.883e-1933.33Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus... [more]
P4HA2_CHICK7.911e-1832.97Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gal... [more]
P4HA1_CAEEL3.926e-1731.89Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabd... [more]
P4HA2_MOUSE6.697e-1732.39Prolyl 4-hydroxylase subunit alpha-2 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B05-D10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078276 ID=CX078276; Name=CX078276; organism=Citrus sinensis; type=EST; length=879bp
TTTTTTTTTAAATAATAAAAGAACCATATGCCATATTAAACAAACACAAA
ATGTCGATTTTACATCAAAGCACACATTTAGCTCAACAGCAACTAAAATG
TCCTAAATCTTTTGACACCTGGAATACTTGTAAATTTCCAAAGTTTTATT
CTATGTGGGCGGCAATACGTGAGGGCTCTCAACTTAATAAAACAAAAATA
AGTTAGCAGGGGCAGAAGGACGTCATCTTTTTAATAATTGAAGCCCAATT
CTCGTTGGAACTTTTGCTGAGACTTTACAAATTTGCTTCAATGATGTGAG
AACTCAGAAACTAAAAGCTTTAAGCCAGTAGTTCAAACCTTATACTCATT
CACACGTATCCATTTTGTAGATGACCACTTATTGCCTTTAATCACAGGGC
AACCTCCATGCAAACTAGAAGGATCTAAAGCGGCATCGGGCTTCATGCTC
CAGAAAAGCAATGCATCACCCATTTTTGGTTTAATAGAAAGTCCTGTCTT
TCCACATTCAGATAACTCATTCCACCAAGGCACAGCACTGATGTTCCCTT
GGGCATTAGGAAAGACTGTCTCACCTCCTTCTTCAACGTCTGAGAGGTAC
ATTAGCACCGTAGCCATGCGTTGCCCCCCATTCTTGGTGTTGAACTCATC
CATGAAATAGTCAAAGTGAGGCTCATATTTTTGTCCAGCTTCATAATGGA
GAACTTGAAGTCCTTCTCCATTCTCTAAAGGCAAGAAAGTGAAATCTGCA
ATCCTTTTCTCAATATCTCTAATAATTTTGTCTCGTCCTCTAGCAAGAAA
TGTTCCAGAACTTGTCCGAACCCTGCTATCTTTGCTCTTGCCAGTATCAC
TATCAACAACAGTCGACTTTCTCATATGA
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