CX078275

Overview
NameCX078275
Unique NameCX078275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX078275_ssr691 microsatellite CX078275_ssr691:691..702. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4932 contig Csv1_Contig4932:1..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX078275 vs. ExPASy Swiss-Prot
Match: C3H18_ARATH (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 53/140 (37.86%), Postives = 76/140 (54.29%), Query Frame = 2 
Query:   17 FTDGDTELHTMPRACNNSRLLRKQLMEEHEQAIELERRRLSEMQLACKPMNHHSYFGYSMEELQVSETPAEQGDFPSAERFNYLLDVLNNGSTSEDQVSHISTHYNDQD---------SQGLNLPESPFASPIGSGISTV 409
            F + D E++T+P   + S  +RK  + E EQ++               P N+ SY G+S ++ +++   AEQ +   AER +YLLD LN    +ED V +I+T+Y D D         SQ LNLPESPF+S  G  ISTV
Sbjct:  415 FIERDIEMNTLPPRVSESSRMRKPFLSEPEQSVSKSL-----------PTNY-SYLGFSSDDFKLTSN-AEQEE--QAERLSYLLDYLN----TEDNVMNITTNYRDNDRRTHCESLDSQVLNLPESPFSSLSGKEISTV 535
The following BLAST results are available for this feature:
BLAST of CX078275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C3H18_ARATH8.393e-1337.86Zinc finger CCCH domain-containing protein 18 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_8B04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B04-D8-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078275 ID=CX078275; Name=CX078275; organism=Citrus sinensis; type=EST; length=787bp
GTTTTGCAGTCTGCACTTCACAGATGGAGATACAGAGCTTCACACAATGC
CAAGAGCGTGCAATAATTCAAGACTACTCCGAAAGCAGCTCATGGAGGAA
CATGAGCAAGCAATTGAACTTGAGAGAAGGCGTCTTTCTGAGATGCAATT
AGCATGTAAACCAATGAACCATCACTCATATTTTGGCTACTCAATGGAAG
AGTTGCAGGTCTCGGAAACCCCTGCAGAACAAGGTGATTTCCCGTCTGCT
GAGCGTTTCAATTATTTGTTGGATGTTCTCAATAATGGTTCCACCAGTGA
GGACCAAGTCAGCCATATAAGTACCCATTACAACGACCAGGATAGCCAAG
GACTTAACCTTCCTGAGAGCCCGTTTGCATCTCCCATAGGAAGCGGCATT
TCTACAGTTATATAGAGATTCAGAAACAGAATGATTATAGAGGTAGAAGA
CTCAGTATGAAGAGTACTTTAATGGGTATAATACACCATCAGAACTTATA
TTTTTCTTTCCCTTTACAATACCAAACGTTGATCAAGTCAGCTCCTTAGA
GTGCATCCCGAATGAAGGAGAGAAAGTAGTAGTAAGTTCTTCTCCATACT
TCATGGTGGAGGATATTGCGAGGAGAAAATTGATACAGAAAGCTAATATG
TTACAGGTCTTTTTCTTTTTATGATCCCTATTAAATTTCCTAATTAATTA
ATGTAATCACAGAAAGAAAGCCGGCGAGCTTGCAGGTTTTTAGAAGAGAA
TGTAATATATAGTCTGCTCTAGTAGGAAAATATATAC
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