CX078273

Overview
NameCX078273
Unique NameCX078273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.443e-31
Identity = 73/114 (64.04%), Postives = 83/114 (72.81%), Query Frame = -3
Query:  246 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDATGMIFGSQTAREYAQGSQQDWLHMQVGGSFERAT 587
            +ARREKISE+M  LQD++PGCNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VNS  +  PTI  F   DLG    D    I+  Q A E  + SQ +WLHMQV G+F R T
Sbjct:  169 RARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPIDVHRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.677e-27
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = -3
Query:  369 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 587
            +ARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN  P IE F PK++
Sbjct:  152 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN--PGIEVFPPKEV 222          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.015e-21
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = -3
Query:  408 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 587
            + RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VN+R++
Sbjct:  274 RVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLD 333          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.717e-21
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = -3
Query:  372 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKD 587
            + RREKISERMK LQDLVPGCNKV GKA++LDEIINY+QSLQRQVEFLSMKL  VN +M+    +EG   KD
Sbjct:  319 RVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDF--NLEGLLAKD 388          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.686e-20
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = -3
Query:  411 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 587
            +ARREKISERM +LQDLVPGCN++ GKA++LDEIINY+QSLQRQVEFLSMKL  VN RM
Sbjct:  207 RARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRM 265          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.699e-20
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = -3
Query:  420 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 587
            + RREKI ERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VN
Sbjct:  317 RVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVN 372          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.822e-19
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = -3
Query:  369 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 587
            + RREKISERM++LQ+LVPGCNK+ GKA++LDEIINY+QSLQ+QVEFLSMKL  VN  +N+   I+    KDL
Sbjct:  222 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINI--DIDRILAKDL 292          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.389e-18
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = -3
Query:  420 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 587
            + RREKISERMK LQDLVPGC+KV GKA++LDEIINY+QSLQ Q+EFLSMKL AVN
Sbjct:  239 RVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVN 294          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.389e-18
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = -3
Query:  414 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 587
            + RREKISERMK LQDLVPGC+K+ GKA +LDEIINY+QSLQRQ+EFLSMKL  VN R
Sbjct:  188 RVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPR 245          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = -3
Query:  348 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDLGEQAFDA 587
            +ARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+QSLQ+QVEFLSMKL  +N      P +E  H  DL  + F A
Sbjct:  157 RARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVIN------PELE-CHIDDLSAKQFQA 229          
The following BLAST results are available for this feature:
BLAST of CX078273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
BH079_ARATH1.443e-3164.04Transcription factor bHLH79 OS=Arabidopsis thalian... [more]
BPE_ARATH3.677e-2789.04Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH062_ARATH3.015e-2181.67Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH049_ARATH6.717e-2172.22Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH077_ARATH5.686e-2079.66Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH078_ARATH9.699e-2083.93Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH074_ARATH2.822e-1965.75Transcription factor bHLH74 OS=Arabidopsis thalian... [more]
BH076_ARATH2.389e-1880.36Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH063_ARATH2.389e-1877.59Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BEE2_ARATH3.120e-1862.50Transcription factor BEE 2 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_8B03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B03-D6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078273 ID=CX078273; Name=CX078273; organism=Citrus sinensis; type=EST; length=811bp
TTTTTTTTTTTTTTCACTAGACAAATTTGTTTAAAAACTTAGAAATAGAG
CACAGAGTATCCAGTCAAATAATACACATGAAGATGAGATGTATTTTCTA
CAAATGATATAATAATACAAACTTAAGAAGGGCCTTGCTTGTAGGAAGAA
ACCAACAGCACCTTTCCCCAATGAGTAAGGATAACAAACAGAACTAAACT
TGCTGCTTAATCCACCGATTATGCAATGAGGTTCATTTAAAGCTACGTAG
CCCTTTCAAAACTTCCACCAACCTGCATATGCAGCCAATCCTGTTGCGAT
CCTTGAGCATATTCTCTTGCTGTTTGTGACCCGAATATCATTCCCGTGGC
ATCAAATGCCTGTTCACCAAGATCTTTTGGATGAAACCCTTCAATGGTAG
GAGTCAAGTTCATCCTTGAATTAACAGCTTCTAACTTCATTGACAGGAAC
TCAACCTGCCGTTGTAGTGACTGAATGTAATTAATTATTTCATCGAGAAC
AAGAGCTTTTCCAATAACCTTATTGCATCCAGGGACCAGATCCTGCAGAA
TCTTCATCCTCTCGCTAATTTTTTCTCGTCTAGCCTGCCAAAACGATTAC
GCATATGTTATGCAGTATGTTTCATAATTGAATAAACTATGTAGCTGTAC
CATCTGTGTTTCAAAATAGAATAGCTGAAAAAAGAAAAGTAGTGTTCAAA
AAAATAAAATAAACAAAGAAGAGAACATTCAACAATGACGACATTTCATA
GGCCATAGCTGTCTATTAAAACTGTTTATTAACCACATGAAGCCTCATCT
TTTGTAATTGA
back to top