CX078268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CITSI (30S ribosomal protein S15, chloroplastic OS=Citrus sinensis GN=rps15 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 4.094e-43 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR Sbjct: 1 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 90
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_LIRTU (30S ribosomal protein S15, chloroplastic OS=Liriodendron tulipifera GN=rps15 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.194e-34 Identity = 76/90 (84.44%), Postives = 80/90 (88.89%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 MVKN+FISV QE+KEKN GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI +L+IRE K R Sbjct: 1 MVKNSFISVIPQEEKEKNKGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELIGRLDIREPKTR 90
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PLAOC (30S ribosomal protein S15, chloroplastic OS=Platanus occidentalis GN=rps15 PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 7.740e-34 Identity = 75/90 (83.33%), Postives = 80/90 (88.89%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 MVKNAFISV QE+KE+N GS EFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKN+VRYKELIS+L+IRE K R Sbjct: 1 MVKNAFISVISQEEKEENKGSAEFQVFNFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNKVRYKELISQLDIREPKIR 90
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_EUCGG (30S ribosomal protein S15, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps15 PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.011e-33 Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 2 Query: 518 MVKNAFISVRVQEK-KEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 MVKN+FISV QE+ KE+N GS+EFQVFRFTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLL+YLSKKNR+RYKELIS+L+IRESK R Sbjct: 1 MVKNSFISVISQEEEKEENRGSIEFQVFRFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLSYLSKKNRIRYKELISQLDIRESKTR 91
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_DRIGR (30S ribosomal protein S15, chloroplastic OS=Drimys granadensis GN=rps15 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.320e-33 Identity = 74/90 (82.22%), Postives = 78/90 (86.67%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 MVKN FISV QE+KEKN GSVEFQVF FTN IRRLT+HLE HRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI +L+IRE K R Sbjct: 1 MVKNLFISVIPQEEKEKNKGSVEFQVFNFTNKIRRLTAHLEFHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELIGQLDIREPKTR 90
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_LOBMA (30S ribosomal protein S15, chloroplastic OS=Lobularia maritima GN=rps15 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.841e-33 Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 M+KNAFIS QEKKE++ GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI +LNIRE K R Sbjct: 1 MIKNAFISF--QEKKEESKGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELIKQLNIRELKTR 88
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_AETGR (30S ribosomal protein S15, chloroplastic OS=Aethionema grandiflora GN=rps15 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 5.017e-33 Identity = 74/90 (82.22%), Postives = 80/90 (88.89%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 M+KNAFIS+ QEKKE++ GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLL YLSKKNRVRYK+LI+KLNIRE K R Sbjct: 1 MIKNAFISL--QEKKEESRGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLVYLSKKNRVRYKDLINKLNIRELKTR 88
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_MANES (30S ribosomal protein S15, chloroplastic OS=Manihot esculenta GN=rps15 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 8.557e-33 Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 MVKN+FISV QE+K++N GSVEFQ+ FTN IRRLTSH ELHRKDY SQRGLRKIL KRQRLL+YL+KKNRVRYKELIS+L+IRESK R Sbjct: 1 MVKNSFISVISQEEKDENKGSVEFQIVSFTNKIRRLTSHFELHRKDYLSQRGLRKILGKRQRLLSYLAKKNRVRYKELISRLDIRESKTR 90
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_BARVE (30S ribosomal protein S15, chloroplastic OS=Barbarea verna GN=rps15 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 8.557e-33 Identity = 74/90 (82.22%), Postives = 80/90 (88.89%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 M+KNAFIS QE+KE++ GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI++LNIRE K R Sbjct: 1 MIKNAFISF--QEQKEESKGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELINQLNIRELKTR 88
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_OLIPU (30S ribosomal protein S15, chloroplastic OS=Olimarabidopsis pumila GN=rps15 PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.118e-32 Identity = 74/90 (82.22%), Postives = 80/90 (88.89%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 M+KNAFIS QE+KE++ GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI++LNIRE K R Sbjct: 1 MIKNAFISF--QEQKEESRGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELINQLNIRELKTR 88 The following BLAST results are available for this feature:
BLAST of CX078268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 220
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX078268 ID=CX078268; Name=CX078268; organism=Citrus sinensis; type=EST; length=868bpback to top |