CX078178

Overview
NameCX078178
Unique NameCX078178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10659 contig Csv1_Contig10659:209..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACLY_CAEEL (Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = -1
Query:  344 NLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 565
            NL+LNVDGAI  LF+D+L  SGMF+KQE +E +EIG LNGLFVL RSIG IGH  DQ RLKQ LYRHPW+D+ Y
Sbjct: 1023 NLILNVDGAIAILFVDILRHSGMFTKQEAEETIEIGSLNGLFVLGRSIGFIGHYLDQSRLKQGLYRHPWDDISY 1096          
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACLY_DICDI (Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.791e-23
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = -1
Query:  344 RANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 574
            +ANNL+LNVDG IG LFLDLL  SG+F++ EI EI+++GYLNG F++ RS+GLIGH  DQ+R KQ LYRH  +DV Y
Sbjct:  544 KANNLILNVDGCIGVLFLDLLHSSGLFTQHEIKEIIDVGYLNGFFIVGRSVGLIGHALDQRRNKQGLYRHQADDVHY 620          
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACLY_MOUSE (ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = -1
Query:  344 NLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 565
            NL+LNVDG IG  F+D+L   G F+++E DE V+IG LNG+FVL RS+G IGH  DQKRLKQ LYRHPW+D+ Y
Sbjct: 1010 NLILNVDGFIGVAFVDMLRNCGSFTREEADEYVDIGALNGIFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISY 1083          
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACLY_HUMAN (ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = -1
Query:  344 NLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 565
            NL+LNVDG IG  F+D+L   G F+++E DE ++IG LNG+FVL RS+G IGH  DQKRLKQ LYRHPW+D+ Y
Sbjct: 1020 NLILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISY 1093          
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACLY_RAT (ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.191e-22
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = -1
Query:  344 NLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 565
            NL+LNVDG IG  F+D+L   G F+++E DE V+IG LNG+FVL RS+G IGH  DQKRLKQ LYRHPW+D+ Y
Sbjct: 1019 NLILNVDGFIGVAFVDMLRNCGSFTREEADEYVDIGALNGVFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISY 1092          
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACLY_SHEEP (ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.474e-22
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = -1
Query:  344 NLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 565
            NL+LNVDG IG  F+D+L   G F+++E DE ++IG LNG+FVL RS+G IGH  DQKRLKQ LYRHPW+D+ Y
Sbjct: 1020 NLILNVDGLIGVAFVDMLRHCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISY 1093          
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACLY_BOVIN (ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.474e-22
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = -1
Query:  344 NLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 565
            NL+LNVDG IG  F+D+L   G F+++E DE ++IG LNG+FVL RS+G IGH  DQKRLKQ LYRHPW+D+ Y
Sbjct: 1010 NLILNVDGLIGVAFVDMLRHCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLKQGLYRHPWDDISY 1083          
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACL1_SCHPO (Probable ATP-citrate synthase subunit 1 OS=Schizosaccharomyces pombe GN=SPBC1703.07 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.338e-22
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  344 RANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 574
            + +NL+LNVDG I   F+DLL   G F+ +E +E + +G LNG+FVL RSIGLIGH  DQKRL+ PLYRHPW+D LY
Sbjct:  537 KKDNLILNVDGCIAVCFVDLLRNCGAFTLEEANEYINLGILNGMFVLGRSIGLIGHHLDQKRLRAPLYRHPWDDFLY 613          
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACL1_SORMA (ATP-citrate synthase subunit 1 OS=Sordaria macrospora GN=ACL1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.124e-20
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = -1
Query:  344 RANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 574
            + +NL+LNVDG I   F+DLL   G FS +E ++ + +G LNGLFVL RSIGLI H  DQKRL+  LYRHPW+D+ Y
Sbjct:  577 KKDNLILNVDGCIAVCFVDLLRNCGAFSTEEAEDYLSMGVLNGLFVLGRSIGLIAHYLDQKRLRTGLYRHPWDDITY 653          
BLAST of CX078178 vs. ExPASy Swiss-Prot
Match: ACL1_NEUCR (Probable ATP-citrate synthase subunit 1 OS=Neurospora crassa GN=B14D6.310 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.124e-20
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = -1
Query:  344 RANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY 574
            + +NL+LNVDG I   F+DLL   G FS +E ++ + +G LNGLFVL RSIGLI H  DQKRL+  LYRHPW+D+ Y
Sbjct:  573 KKDNLILNVDGCIAVCFVDLLRNCGAFSTEEAEDYLSMGVLNGLFVLGRSIGLIAHYLDQKRLRTGLYRHPWDDITY 649          
The following BLAST results are available for this feature:
BLAST of CX078178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ACLY_CAEEL2.625e-2470.27Probable ATP-citrate synthase OS=Caenorhabditis el... [more]
ACLY_DICDI3.791e-2363.64Probable ATP-citrate synthase OS=Dictyostelium dis... [more]
ACLY_MOUSE3.209e-2263.51ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 ... [more]
ACLY_HUMAN3.209e-2262.16ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 ... [more]
ACLY_RAT4.191e-2263.51ATP-citrate synthase OS=Rattus norvegicus GN=Acly ... [more]
ACLY_SHEEP5.474e-2262.16ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV... [more]
ACLY_BOVIN5.474e-2262.16ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV... [more]
ACL1_SCHPO9.338e-2259.74Probable ATP-citrate synthase subunit 1 OS=Schizos... [more]
ACL1_SORMA5.124e-2057.14ATP-citrate synthase subunit 1 OS=Sordaria macrosp... [more]
ACL1_NEUCR5.124e-2057.14Probable ATP-citrate synthase subunit 1 OS=Neurosp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_7D12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7D12-H23-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078178 ID=CX078178; Name=CX078178; organism=Citrus sinensis; type=EST; length=574bp
CTTTTTTTTTTCTTACTAAAAGCCGTCCATTTCTAATCATGGTGGCTAAA
AATTTTATTCAAATATTCAAGAATGGAGAGATCCTTATACAACAATGCAA
GCTCTGCATCTAGATTTTGAAACATCACTTCGTTCAATTAATGATCTGAG
AGTCGTATCTTGATGAACTTTCAACTCACAGACCAAAGTTTTCGGCTGGT
ACTTCAAATTACAAAAACAGTAATCTAAAAACCCAACAACAATTCCAGCA
AAATACAGATTTAAAGACTTCAAAAGGGAAAATGTTTTGGAAAGCATGTT
GATTATGATTTCCCACCTGTTGCCGGTAAGTGAATTACTTGGTGTAGAGA
ACATCTTCCCATGGGTGACGGTATAGAGGTTGTTTCAATCTCTTCTGGTC
AAAGGTATGCCCAATCAAACCGATGGAGCGTGCCAGAACAAAGAGCCCAT
TCAGATATCCAATTTCCACTATCTCATCGATTTCTTGCTTGCTGAACATT
CCACTGCCGGCAAGAAGATCCAAGAAAAGGGACCCAATTGCACCATCTAC
ATTAAGAACCAGGTTGTTTGCCCT
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