CX078146

Overview
NameCX078146
Unique NameCX078146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9526 contig Csv1_Contig9526:372..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX078146 vs. ExPASy Swiss-Prot
Match: RBM25_MOUSE (RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.949e-23
Identity = 47/103 (45.63%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:   15 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 323
            K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S    H     +L+ +  +LD+EAE+F++KMWR+LI+E +  + GL
Sbjct:  737 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 839
[Close]
BLAST of CX078146 vs. ExPASy Swiss-Prot
Match: RBM25_HUMAN (RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.949e-23
Identity = 47/103 (45.63%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:   15 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 323
            K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S    H     +L+ +  +LD+EAE+F++KMWR+LI+E +  + GL
Sbjct:  739 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 841
The following BLAST results are available for this feature:
BLAST of CX078146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBM25_MOUSE1.949e-2345.63RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE... [more]
RBM25_HUMAN1.949e-2345.63RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_7C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7C05-F9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078146 ID=CX078146; Name=CX078146; organism=Citrus sinensis; type=EST; length=615bp
AAACTTTTGGATGCAAACAATTGATTGATATGATCCCTAAGACAAAGGAG
GAGTTGTTCTCATATGAGATAAATTGGGCCGTGTACGACAAGCATGAGCT
GCATGAGAGAATGAGACCGTGGATTTCAAAGAAGATTACAGAGTTTCTCG
GAGAAGAAGAAACTACTTTGGTAGACTATATTGTATCCAGTACTCAAGAC
CATGTGAAGGCATCCCAAATGTTGGAGTTGCTACAAACTATTTTAGACGA
TGAAGCTGAAATGTTTGTCCTTAAGATGTGGAGGATGCTCATCTTTGAAA
TCAAGAAGGTAGAGACGGGTCTTGCGTTGAGATCAAAATCCTAAATGGAT
CGGTTACTCATCTTTGATATCAAGATAGTAGACTTGCATTGAGATCAAAA
TCCTAAATGGATCTTGTTTTTTGTTTGTTTCTGCTAGTTGCAAGGCTGAT
TCTTGCCATTGTATCCATTAACTAGTAAACCCATTTTGTTAGTCATCTCC
CTCTGGAGAAACGAACATGGATTGCAATTAAGGTCTATCCTTGTTCTTAT
GCGTATGTATTATTTTCATCTATCAAGAAATGAATCTATTTGTACTGAGA
AAAAAAAAAAAAAAA
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