CX078137

Overview
NameCX078137
Unique NameCX078137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_CITSI (DNA-directed RNA polymerase subunit alpha OS=Citrus sinensis GN=rpoA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.386e-55
Identity = 112/126 (88.89%), Postives = 116/126 (92.06%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 148
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_DAUCA (DNA-directed RNA polymerase subunit alpha OS=Daucus carota GN=rpoA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.343e-50
Identity = 100/126 (79.37%), Postives = 112/126 (88.89%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGI+MRR LLGEIEGTCITRAKSEKIPHEYST+VGIQESVH+ILMNLK+IVLRSNLYGTCDA ICV+GPGYVTAQDI+LPP VE+VDNTQHIASLTEPI+L IG
Sbjct:   23 DNKRLYYGRFILSPLMKGQADTIGISMRRALLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELCIG 148
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_GOSHI (DNA-directed RNA polymerase subunit alpha OS=Gossypium hirsutum GN=rpoA PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.906e-50
Identity = 101/126 (80.16%), Postives = 110/126 (87.30%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR LLGE+EGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK+IVLR NLYGT +A IC KGPGYVTAQDI+LPPSVEIVDNTQH+ASLTEPIDL IG
Sbjct:   25 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGELEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHVASLTEPIDLCIG 150
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_GOSBA (DNA-directed RNA polymerase subunit alpha OS=Gossypium barbadense GN=rpoA PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.906e-50
Identity = 101/126 (80.16%), Postives = 110/126 (87.30%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR LLGE+EGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK+IVLR NLYGT +A IC KGPGYVTAQDI+LPPSVEIVDNTQH+ASLTEPIDL IG
Sbjct:   25 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGELEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHVASLTEPIDLCIG 150
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_PANGI (DNA-directed RNA polymerase subunit alpha OS=Panax ginseng GN=rpoA PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.102e-50
Identity = 99/126 (78.57%), Postives = 110/126 (87.30%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR LLGEIEGTCITRAKSEKIPHEYST+VGIQESVHEILMNLK+I+L+SNLYGTCDA IC++GPGYVTAQDI+ PP VEIVDNTQHIASL EPIDL IG
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILKSNLYGTCDASICIRGPGYVTAQDIISPPYVEIVDNTQHIASLAEPIDLCIG 148
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_SOLTU (DNA-directed RNA polymerase subunit alpha OS=Solanum tuberosum GN=rpoA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.702e-50
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR LLGEIEGTCITR KSEK+PHEYSTI GIQESVHEILMNLK+IVLRSNLYGT DA ICVKGPGYVTAQDI+LPP VEIVDNTQHIASLTEPID  IG
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIG 148
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_SOLBU (DNA-directed RNA polymerase subunit alpha OS=Solanum bulbocastanum GN=rpoA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.702e-50
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR LLGEIEGTCITR KSEK+PHEYSTI GIQESVHEILMNLK+IVLRSNLYGT DA ICVKGPGYVTAQDI+LPP VEIVDNTQHIASLTEPID  IG
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIDFCIG 148
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_LACSA (DNA-directed RNA polymerase subunit alpha OS=Lactuca sativa GN=rpoA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.702e-50
Identity = 100/126 (79.37%), Postives = 112/126 (88.89%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L++G  +L+   K +ADTIGIAMRR LLGEIEGTCITRAKSEKI HEYSTI+GIQESVHEILMNLK+IVLRSNLYGTC+A ICV+GPGYVTAQDI+LPP VEI+DNTQHIASLTEPI+L IG
Sbjct:   23 DSKRLLYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEILDNTQHIASLTEPIELVIG 148
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_HELAN (DNA-directed RNA polymerase subunit alpha OS=Helianthus annuus GN=rpoA PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 8.702e-50
Identity = 100/126 (79.37%), Postives = 112/126 (88.89%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L++G  +L+   K +ADTIGIAMRR LLGEIEGTCITRAKSEKI HEY+TI+GIQESVHEILMNLK+IVLRSNLYGTC+A ICV+GPGYVTAQDI+LPP VEIVDNTQHIASLTEPI+L IG
Sbjct:   23 DSKRLLYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKISHEYATIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIELVIG 148
[Close]
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_RANMC (DNA-directed RNA polymerase subunit alpha OS=Ranunculus macranthus GN=rpoA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.939e-49
Identity = 101/126 (80.16%), Postives = 109/126 (86.51%), Query Frame = 3 
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR LLGEIEGTCITRAKSEKIPHEYSTIVGI+ESVHEILMNLK+IVLRSNLYGT DA ICVKGPGYVTAQDI+ PPSVEIVD TQHIASLTEP+D  IG
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEIVDTTQHIASLTEPVDFCIG 148
The following BLAST results are available for this feature:
BLAST of CX078137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RPOA_CITSI1.386e-5588.89DNA-directed RNA polymerase subunit alpha OS=Citru... [more]
RPOA_DAUCA1.343e-5079.37DNA-directed RNA polymerase subunit alpha OS=Daucu... [more]
RPOA_GOSHI3.906e-5080.16DNA-directed RNA polymerase subunit alpha OS=Gossy... [more]
RPOA_GOSBA3.906e-5080.16DNA-directed RNA polymerase subunit alpha OS=Gossy... [more]
RPOA_PANGI5.102e-5078.57DNA-directed RNA polymerase subunit alpha OS=Panax... [more]
RPOA_SOLTU8.702e-5080.16DNA-directed RNA polymerase subunit alpha OS=Solan... [more]
RPOA_SOLBU8.702e-5080.16DNA-directed RNA polymerase subunit alpha OS=Solan... [more]
RPOA_LACSA8.702e-5079.37DNA-directed RNA polymerase subunit alpha OS=Lactu... [more]
RPOA_HELAN8.702e-5079.37DNA-directed RNA polymerase subunit alpha OS=Helia... [more]
RPOA_RANMC1.939e-4980.16DNA-directed RNA polymerase subunit alpha OS=Ranun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_7B10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7B10-D19-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078137 ID=CX078137; Name=CX078137; organism=Citrus sinensis; type=EST; length=794bp
GAGAAATCAAAAGACATGGGAAAGCAGCCGGTGAGAATGAAGGCGGTGGT
GTACGCACTGTCGCCATTTCAACAAAAGATTATGCCGGGGCTTTGGAAGG
ATCTGACCGGTAAGATCCATCACAAGGTCTCCGATAATTGGATCAGCACT
ATCCTTTTGCTCGGTCCTCTCGTCGGCACCTACGCGTATGTCCAAAATTA
CCAGGAGAAGGAGAAGTTGGCACACAGGTATTGAAGCAAGCTGATGTGCC
TCTATTTTTTCAGAAGCTTAAGGTTCTTGTGAATTAGCTACAACTCTTGT
TGAAGTTGTGAAACATAATTGAAATTGCTATGTAGTTGAGACTACAGTAG
TTTGATTTGTGGGTTTTGTTGATGGATTGAGAACTATTGTCAAAATTCTG
AGCAATATTTTCTCTTTCTTTTGATGAAATAAATTTGATGCATGGATTGC
TAAATGCAAAAAAAAAAAAAAAAGCCGACACAATAGGCATTGCGATGCGA
AGAGTTTTGCTTGGAGAAATAGAAGGAACATGTATTACACGCGCAAAATC
TGAAAAAATTCCACACGAATATTCTACCATAGTGGGTATTCAAGAATCGG
TACATGAAATTTTAATGAATTTGAAAGATATTGTATTGAGAAGTAATCTT
TATGGAACTTGTGACGCGCTTATTTGTGTCAAAGGCCCGGGATATGTAAC
TGCTCAAGACATCCTCTTGCCGCCTTCTGTGGAAATCGTTGATAATACGC
AGCACATAGCTAGCCTAACAGAACCAATTGATTTGTCTATTGGA
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