CX078109

Overview
NameCX078109
Unique NameCX078109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078109 vs. ExPASy Swiss-Prot
Match: PCKA_CUCSA (Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis sativus GN=PCK PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 66/144 (45.83%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  475 EMAANGNGEFSF----GKGTARKGLAKIQTAASQKK-QSAICHDDSTPPVKAQTIDELHSLQKKRSAPNTPIKGTQGSFSPLSDEARXXXXXXXXXXXXXXXTRETGPKVVRGDPARKAETPKFAADPGDHFSF-TPTISVSDS 888
            E     NGEFSF    G  T R+GL KI T  +    +  ICHDDST P++A+T++ LHSLQKKRS P TP+  +QG FSP+S+  R               TRETGPK+V+GDP +K E  K  A   DH  F  P +++SDS
Sbjct:    2 ENEGKDNGEFSFVSDGGAETGRRGLPKIHTEKNAPTTERDICHDDSTTPMRARTLEHLHSLQKKRSTPTTPLTDSQGVFSPVSEAERQKQQLISISASLASLTRETGPKLVKGDPEKKKEAHK--ASVLDHLHFGEPILNLSDS 143          
BLAST of CX078109 vs. ExPASy Swiss-Prot
Match: PCKA_ARATH (Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.749e-23
Identity = 72/143 (50.35%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  481 AANGNGEFSFGKGTARKGLAKIQTAASQKKQSAICHDDSTPPVKAQTIDELHSLQKKRSAPNTPI-KGTQGSFSPLSDEARXXXXXXXXXXXXXXXTRETGPKVVRGDPARK----AETPKFAADPGDHFS-FTP-TISVSDS 888
            A NG+G FSF KG     + KI T A+ K+ S +CHDDS P V A TIDELHSLQKKRSAP TPI +    +F+ +S+E R               TRE+GPKVVRGDPA K    + TP +A   G H S F+P T +VSDS
Sbjct:    8 ATNGDGGFSFPKGPV---MPKITTGAA-KRGSGVCHDDSGPTVNATTIDELHSLQKKRSAPTTPINQNAAAAFAAVSEEERQKIQLQSISASLASLTRESGPKVVRGDPAEKKTDGSTTPAYA--HGQHHSIFSPATGAVSDS 144          
BLAST of CX078109 vs. ExPASy Swiss-Prot
Match: PCKA_MAIZE (Phosphoenolpyruvate carboxykinase [ATP] OS=Zea mays PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.317e-19
Identity = 62/139 (44.60%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  532 GLAKIQTAASQKKQSAICHDDSTPPVKAQTIDELHSLQKK--------RSAPNTPIKGTQGSFSP----LSDEARXXXXXXXXXXXXXXXTRETGPKVVRGDPARKAE--------TPKFAADPGDHFSFTPTISVSDS 888
            GLA+I+T   +K+ + + +DDS+ PV+AQTIDELHSLQ+K        RSAP TPIKG  G+ SP    +S+E R               TRETGPKVV+GDPA K E        TP+  A         P I+VSDS
Sbjct:    6 GLARIETTGKKKQDNGVWYDDSSAPVRAQTIDELHSLQRKRSAPTTPNRSAPTTPIKG--GAHSPFAVAISEEERHTQQMQSISASLASLTRETGPKVVKGDPAAKGEAAAQGAPSTPR--AHQQHRHPAAPAIAVSDS 140          
The following BLAST results are available for this feature:
BLAST of CX078109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PCKA_CUCSA1.988e-2445.83Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis... [more]
PCKA_ARATH3.749e-2350.35Phosphoenolpyruvate carboxykinase [ATP] OS=Arabido... [more]
PCKA_MAIZE7.317e-1944.60Phosphoenolpyruvate carboxykinase [ATP] OS=Zea may... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_7A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7A07-B13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078109 ID=CX078109; Name=CX078109; organism=Citrus sinensis; type=EST; length=888bp
GTACCGCGGCCCCCCCGCATCACATTNAGCTGGTTGCAACACTAAGTAAT
GCCACCCAGAAAGAAAGCAGTTTGGCAACAATTCTTGAAGCTTGTATAGT
TCTTCTATTATAATTTGGAAGTACATTAAAGTGATAAACCTTGATAGAGA
ACATGAAATTGTTCACTCCACATGCGAAAGACCACCGCCGCTTTCAGACT
TTGTTTTGTGGTCGGAGGGATTCGGCCTCAGCTCATAAACAATTGTTGCC
ACGACGTCCCTCTTCAACTGGGTGGCTTCCCCTTTTAGGCCAATGTAGTG
TATCTGAGTTGTGTCACCACCAAAATTGTCAGGGCCTTATTCAATTTGCG
TACTACAAACTGCACTTTGAATGATCGGGCTACCTCAGCTTTTATATTTC
ATCTCCCATTAGTCTTCATTTTTCTTTTTGTTCACTTTCGTTTCAAGCTC
GCAATCTCGGGGGAAGAGTCGTGAGAAATGGCAGCGAACGGTAACGGAGA
GTTTAGCTTCGGAAAAGGAACGGCGAGGAAGGGGCTAGCGAAGATTCAAA
CGGCGGCTTCGCAGAAGAAGCAGAGCGCGATATGCCACGACGACAGCACG
CCGCCTGTTAAGGCTCAGACGATTGACGAGCTTCACTCGCTTCAAAAGAA
AAGATCTGCACCAAACACCCCCATTAAAGGGACCCAGGGCTCTTTTTCGC
CTCTTTCGGATGAGGCACGACAGAAACAGCAGCTCCAGTCCATCAGTGCA
TCGTTGGCGTCACTGACAAGAGAAACAGGGCCAAAGGTGGTGAGAGGAGA
TCCGGCGAGAAAGGCAGAGACACCAAAGTTTGCGGCAGATCCCGGTGACC
ATTTCTCTTTCACGCCAACAATCAGCGTCAGTGACAGT
back to top