EY702355

Overview
NameEY702355
Unique NameEY702355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702355_ssr57 microsatellite EY702355_ssr57:57..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.663e-32
Identity = 66/98 (67.35%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  196 MATVNAYQGNXXXXXXXXXXXXKQPVNTLKTVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPFK 489
            MA VN YQGN            KQP    KTVD+QSVLKRLQSELM LMM G  GISAFPEEDNIFCWKGTI GSKD+ FEG EYR+SLSF    PFK
Sbjct:    1 MAAVNGYQGNTPADPPASNGS-KQPAAPTKTVDSQSVLKRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFK 97          

HSP 2 Score: 35.039 bits (79), Expect = 5.663e-32
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 3
Query:  468 SHDNPLQASKVNS*PGCFLPNVNNYGKIWLGFLQDK 575
            S+D P +  KV     CF PNV+ YG I L  LQDK
Sbjct:   91 SNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDK 126          
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.251e-31
Identity = 63/98 (64.29%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  196 MATVNAYQGNXXXXXXXXXXXXKQPVNTLKTVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPFK 489
            MATVN Y GN            KQ     KTVD+ SVLKRLQSELM LMM  D GISAFPEEDNIFCWKGTI GSKD+ FEG EYR+SL+F    PFK
Sbjct:    1 MATVNGYTGNTPAATTPAATGSKQSAPPTKTVDSHSVLKRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFK 98          

HSP 2 Score: 35.8094 bits (81), Expect = 1.251e-31
Identity = 18/36 (50.00%), Postives = 22/36 (61.11%), Query Frame = 3
Query:  468 SHDNPLQASKVNS*PGCFLPNVNNYGKIWLGFLQDK 575
            S+D P ++ KV     CF PNV+ YG I L  LQDK
Sbjct:   92 SNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDK 127          
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.588e-16
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  301 SVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPFK 489
            SV KRLQSELM LMM    GISAFP+ DNIF W GTIQG+KD+ +E  E+++SL FP   P+K
Sbjct:    6 SVSKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYK 68          

HSP 2 Score: 29.261 bits (64), Expect = 1.588e-16
Identity = 15/34 (44.12%), Postives = 18/34 (52.94%), Query Frame = 3
Query:  474 DNPLQASKVNS*PGCFLPNVNNYGKIWLGFLQDK 575
            D P +   V     CF PNV+N G I L  L+DK
Sbjct:   64 DYPYKPPTVKFETQCFHPNVDNNGNICLDILKDK 97          
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.282e-15
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  301 SVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPF 486
            SV KRLQ ELM LMMSGD GISAFPE DN+F W GTI G+  + +E   Y++SL FP   P+
Sbjct:   30 SVGKRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPY 91          

HSP 2 Score: 28.8758 bits (63), Expect = 1.282e-15
Identity = 14/32 (43.75%), Postives = 18/32 (56.25%), Query Frame = 3
Query:  480 PLQASKVNS*PGCFLPNVNNYGKIWLGFLQDK 575
            P  A  V     CF PNV+++G I L  L+DK
Sbjct:   90 PYNAPTVKFVTPCFHPNVDSHGNICLDILKDK 121          
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.356e-14
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  310 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPF 486
            KRLQ ELM LMMSGD GISAFPE DN+F W GTI G+  + +E   Y++SL FP   P+
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91          

HSP 2 Score: 26.1794 bits (56), Expect = 1.356e-14
Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 3
Query:  480 PLQASKVNS*PGCFLPNVNNYGKIWLGFLQDK 575
            P  A  V     C+ PNV+  G I L  L+DK
Sbjct:   90 PYNAPTVKFLTPCYHPNVDTQGNICLDILKDK 121          
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.356e-14
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  310 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPF 486
            KRLQ ELM LMMSGD GISAFPE DN+F W GTI G+  + +E   Y++SL FP   P+
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91          

HSP 2 Score: 26.1794 bits (56), Expect = 1.356e-14
Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 3
Query:  480 PLQASKVNS*PGCFLPNVNNYGKIWLGFLQDK 575
            P  A  V     C+ PNV+  G I L  L+DK
Sbjct:   90 PYNAPTVKFLTPCYHPNVDTQGNICLDILKDK 121          
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.480e-14
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  310 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPF 486
            KRLQ ELM LM SGD GISAFPE DN+F W GTI G+  + +E   Y++SL FP   P+
Sbjct:   33 KRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91          

HSP 2 Score: 26.1794 bits (56), Expect = 8.480e-14
Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 3
Query:  480 PLQASKVNS*PGCFLPNVNNYGKIWLGFLQDK 575
            P  A  V     C+ PNV+  G I L  L+DK
Sbjct:   90 PYNAPTVKFLTPCYHPNVDTQGNICLDILKDK 121          
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.930e-13
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  262 KQPVNTLKTVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPFK 489
            ++P +   + +  SV KRLQ EL  L+MSGD GI+AFP+ DN+F W  T+ G KD+ +E  +Y+++L FP   P+K
Sbjct:   17 ERPRDMTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 92          
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.930e-13
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  310 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPF 486
            KRLQ ELM LMMSGD GISAFPE DN+F W GTI G+  + +E   Y++SL FP   P+
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91          
BLAST of EY702355 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.162e-12
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  289 VDTQSVLKRLQSELMALMMSGDSGISAFPEED-NIFCWKGTIQGSKDSGFEGNEYRISLSFPMITPFKLLK*IPNPAVSSPM 531
            VD  SV KRL+SELM+LMMS   GISAFP+ D N+  W GTI G  D+ +EG +++IS+SFP   P+      P    +SPM
Sbjct:   24 VDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYS----PPTIIFTSPM 101          

HSP 2 Score: 20.7866 bits (42), Expect = 1.162e-12
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 3
Query:  525 PNVNNYGKIWLGFLQDKCAITF 590
            PNV+  G I L  L+DK +  +
Sbjct:  104 PNVDMSGNICLDILKDKWSAVY 125          
The following BLAST results are available for this feature:
BLAST of EY702355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UBC20_ARATH5.663e-3267.35Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC19_ARATH1.251e-3164.29Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_DICDI1.588e-1661.90Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBE2C_XENLA1.282e-1559.68Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_MACFA1.356e-1459.32Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN1.356e-1459.32Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2C_MOUSE8.480e-1457.63Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_SPISO8.930e-1344.74Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2C_HUMAN8.930e-1359.32Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC11_SCHPO1.162e-1250.00Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-B01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702355 ID=EY702355; Name=EY702355; organism=Citrus sinensis; type=EST; length=969bp
CCACGCGTCCGACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAAT
TCGTTCTCTTCTTCTTCTTCTTCTTCTCATCGTCACTGCAATTGAGCAAT
CCGACAGCGTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTT
GTTTGAATCAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGC
TACAGTTAACGCTTACCAAGGCAATACTCCGGTGGCCGCTTCAACAACGG
CAACAGCACCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAA
TCTGTGCTTAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGG
GGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGA
AAGGTACGATCCAGGGCAGCAAAGACTCTGGTTTCGAAGGAAATGAATAC
AGGATTTCCCTTTCATTTCCCATGATAACCCCCTTCAAGCTTCTAAAGTG
AATTCCTAACCCGGCTGTTTCCTCCCCAATGTTAATAATTACGGCAAAAT
TTGGTTGGGCTTTCTCCAGGATAAATGTGCCATCACCTTTTGGTTGGGGG
AAACGGTGGGGGCTGGGGGACGGAGGACGTCGGCTGGGAGACCCAAACTT
TTAGTCCTTCTTTTAAACTAGTCGTGTGGAGGTTCAGTTTGTGGGAAAAT
CCGGAAAAAATATAGGCCAAAAGGGCTTTAGAAACTTTTATCCATCCTTA
CGAGGCGGGGTAGTGCTGGGGAAAAATTCTAACGGAGCATTAAAGAGGGG
GGGGTCAAAATGGGGTGTGGTTCAGAGATCATAGCTGTGGCTGCGGTTAG
GGAGAGGGCTGTAGGCAAAATGCTCGCGGTCTGAGAGGGGCAGCCGGTCG
CGGGGGACGCTGGGGGGAGCGAAGAACGCGTCGTTTTTTCCTGGTGCCGC
CTAGGAGGAGGGAGGGGGG
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