CX078069

Overview
NameCX078069
Unique NameCX078069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX078069 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = -2 
Query:  155 TYIIASHPLEAGKMVMNCDWSKPSTSDLLRPAQNAHPY---*DLIHTAEKGRVEGG 313
            TYI+ASH LEAG MV+NCD SKPS S  LRPAQNAH Y    +L  T  KGRVEGG
Sbjct:  281 TYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGG 336
[Close]
BLAST of CX078069 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = -2 
Query:  155 TYIIASHPLEAGKMVMNCDWSKPSTSDLLRPAQNAHPY---*DLIHTAEKGRVEGG 313
            TYI+ASH LEAG MV+NCD SKPS S  LRPAQNAH Y    +L  T  KGRVEGG
Sbjct:  281 TYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGG 336
[Close]
BLAST of CX078069 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = -2 
Query:  155 TYIIASHPLEAGKMVMNCDWSKPSTSDLLRPAQNAHPY---*DLIHTAEKGRVEGG 313
            TYI+ASH LEAG MV+NCD SKPS S  LRPAQNAH Y    +L  T  KGRVEGG
Sbjct:  281 TYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGG 336
[Close]
BLAST of CX078069 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.148e-11
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = -2 
Query:  203 TYIIASHPLEAGKMVMNCDWSKPSTSDLLRPAQNAHP 313
            TYIIASH LEAGKMVMNCDWSKPSTS  L+ AQN HP
Sbjct:  307 TYIIASHQLEAGKMVMNCDWSKPSTSSFLQSAQNDHP 343
The following BLAST results are available for this feature:
BLAST of CX078069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RM02_ORYSJ2.090e-1267.8660S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI2.090e-1267.8660S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA2.090e-1267.8660S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ARATH5.148e-1183.7860S ribosomal protein L2, mitochondrial OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_6G06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6G06-M12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078069 ID=CX078069; Name=CX078069; organism=Citrus sinensis; type=EST; length=845bp
GCCCCCCCTCGAGATAAGGAGTCGAGCGCACAGATGCTGGGGGACGGACA
AGGCGATCGCACGAAAAAATGACTTTGGGAGAGAACCGAGGGTCGACGAA
GTTGAGGAATCGGACCCGGAAATGGATATTTGAAGGTAATGTTGTGGTGA
ATAAGCCCCCTTCCACTCGGCCTTTCTCCGCTGTGTGAATAAGGTCTTAG
TATGGATGGGCATTCTGGGCAGGTCGCAATAAGTCGCTGGTCGAAGGTTT
GGACCAATCGCAATTCATCACCATTTTGCCTGCTTCTAATGGATGACTGG
CTATTATATAAGTGTTGACCTAAGCCCCCGTGCTGGGGCTCGGCTCCCGA
ACCGTACGTGAGCTGCCTCGTACGGCTCTTCCTAAGAATAAGAACTTGAA
GCTTTAAATAGAAAGAAAAAAAAAATGCATTTACAAGACAAAAAACACTT
TTTCAAAAAGCCTTCGCCCTCCTATTCAACGGGGCTATTAGAGAAGCAGC
TTCGTTCCTTGACTTCTTTGCTCAGTCAAGCTTCCTTGTTCCTTAGTGTA
GTCCCGGTCCATAGTTTAAGACTCCGTTCCTTATAGCCTAGTCTATATCC
ACAGCTGACGGTGACTCCGTACCCGTACCGACGCCTTTCCTTTTGTAGAC
GGCTAAATGACTTCGTAACCTTAACGTACTGATTTTCGTACTTTCTTTCT
TACACTAATAGAAAAAAAACAACTACTAGACTAGACTAGTAGTTGAGTGC
TCCTTGTTGTTCGGATCTTGACCGGGTCCGAGCTTTCCAAGCTCTATGCT
GTTGGGGAACTTTGCAAGGGTCTTACCACCTTCTTGATTTACAAT
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