CX078042

Overview
NameCX078042
Unique NameCX078042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11486 contig Csv1_Contig11486:462..1227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 7.669e-80
Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = -2
Query:  304 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 765
            DLRG AGGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG+ FASLYPGCIA+TGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVSDPSLTKSGVYWSWN  SASFENQLS+EASDVEKARKVWEISEKLVGLA
Sbjct:  248 DLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGVTFASLYPGCIASTGLFREHIPLFRALFPPFQKYITKGYVSETESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401          
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: PORA_ARATH (Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 1.002e-79
Identity = 143/154 (92.86%), Postives = 148/154 (96.10%), Query Frame = -2
Query:  304 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 765
            DLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQVV+DPSLTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct:  252 DLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405          
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: POR_PEA (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.708e-79
Identity = 142/154 (92.21%), Postives = 147/154 (95.45%), Query Frame = -2
Query:  304 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 765
            DLRG AGGL GLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRR+HEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE+E+GKRLAQVVSDPSLTKSGVYWSWN  SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  246 DLRGLAGGLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399          
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.708e-79
Identity = 141/154 (91.56%), Postives = 149/154 (96.75%), Query Frame = -2
Query:  304 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 765
            DLRG AGGLNG+NSS+MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVS+PSLTKSGVYWSWNKDSASFENQLS+EASDVEKARKVWE+SEKLVGLA
Sbjct:  245 DLRGLAGGLNGMNSSAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEAESGKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398          
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: PORB_HORVU (Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.375e-78
Identity = 137/154 (88.96%), Postives = 148/154 (96.10%), Query Frame = -2
Query:  304 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 765
            DLRG A GLNG+ S++MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETG+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVS+PSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWE+SEKLVGLA
Sbjct:  242 DLRGLAAGLNGVGSAAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395          
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: PORA_CUCSA (Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.375e-78
Identity = 140/154 (90.91%), Postives = 149/154 (96.75%), Query Frame = -2
Query:  304 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 765
            DLRG AGGLNGL SS MIDGG+FDGAKAYKDSKVCNMLTMQEFH+R+HEETGI FASLYPGCIATTGLFREHIPLFR+LFPPFQK+IT+GYVSEDEAGKRLAQVVS+PSLTKSGVYWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  246 DLRGLAGGLNGLKSS-MIDGGEFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398          
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: PORB_ORYSJ (Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.036e-76
Identity = 135/154 (87.66%), Postives = 148/154 (96.10%), Query Frame = -2
Query:  304 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 765
            DLRG A GL+G++SS+MIDGG+FDGAKAYKDSKVCNMLTMQEFHRR+H ETG+ FASLYPGCIATTGLFREH+PLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSLTKSGVYWSWN +SASFENQLS+EASD EKA+KVWE+SEKLVGLA
Sbjct:  245 DLRGLASGLDGVSSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHGETGVTFASLYPGCIATTGLFREHVPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNNNSASFENQLSEEASDPEKAKKVWELSEKLVGLA 398          
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: PORC_ARATH (Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.687e-75
Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = -2
Query:  304 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 765
            DLRG A GLNG NSS MIDGG+FDGAKAYKDSKVCNMLTMQE HRR+HEETG+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSL KSGVYWSWN +S+SFENQLS+EASD EKA+K+WE+SEKLVGLA
Sbjct:  249 DLRGLASGLNGQNSS-MIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEETGVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401          
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: PORA_ORYSJ (Protochlorophyllide reductase A, chloroplastic OS=Oryza sativa subsp. japonica GN=PORA PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.823e-74
Identity = 133/154 (86.36%), Postives = 144/154 (93.51%), Query Frame = -2
Query:  307 DLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 765
            DLRG AGGL G N S+MIDG + FDGAKAYKDSK+CNMLTMQEFHRRFHEETGI FASLYPGCIATTGLFREHIPLFRLLFPPFQ+++TKG+VSE E+GKRLAQVV DPSLTKSGVYWSWNKDSASFENQLSQEASD EKARK+W++SEKLVGL
Sbjct:  233 DLRGLAGGLRGQNGSAMIDGAESFDGAKAYKDSKICNMLTMQEFHRRFHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQRFVTKGFVSEAESGKRLAQVVGDPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKLWDLSEKLVGL 386          
BLAST of CX078042 vs. ExPASy Swiss-Prot
Match: PORA_WHEAT (Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.213e-74
Identity = 133/155 (85.81%), Postives = 146/155 (94.19%), Query Frame = -2
Query:  304 DLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 765
            DLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++PSLTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  234 DLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388          
The following BLAST results are available for this feature:
BLAST of CX078042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PORB_ARATH7.669e-8092.86Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_ARATH1.002e-7992.86Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_PEA1.708e-7992.21Protochlorophyllide reductase, chloroplastic OS=Pi... [more]
POR_DAUCA1.708e-7991.56Protochlorophyllide reductase, chloroplastic OS=Da... [more]
PORB_HORVU9.375e-7888.96Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_CUCSA9.375e-7890.91Protochlorophyllide reductase, chloroplastic OS=Cu... [more]
PORB_ORYSJ1.036e-7687.66Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORC_ARATH5.687e-7587.66Protochlorophyllide reductase C, chloroplastic OS=... [more]
PORA_ORYSJ2.823e-7486.36Protochlorophyllide reductase A, chloroplastic OS=... [more]
PORA_WHEAT8.213e-7485.81Protochlorophyllide reductase A, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F02-K4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078042 ID=CX078042; Name=CX078042; organism=Citrus sinensis; type=EST; length=766bp
TTTTTTTTTTTTTTTTTAAGAAGTCCTTGAAGTACAATTAACATGAAGCC
GAAATGTTTCTCTTTTCATTTCATATTAGACTCTGAAATAACTACCACTT
TGCAACAGGAGTGAGTGATTTATTGACATTTTTTTTCCACAAGCCATCTA
CATCTACAATTGAAAAGCTGACCACAATTCCAAACTCCGCTACCTAACAA
ACCTTCAAGCTCATAAAACCCTCCGCTACCTAACAAACCTTCAAGCTCAT
AAAACCCTCCCATAACATAAACTGGTAGATCTGAATCTCCAGGTTTTGAA
TTAGGCCAAACCAACAAGTTTCTCACTTATCTCCCAGACTTTACGTGCCT
TCTCAACGTCACTAGCTTCCTGAGACAACTGATTCTCAAATGAAGCTGAG
TCCTTGTTCCAGCTCCAGTAAACACCTGATTTTGTCAAGCTTGGATCGCT
CACAACCTGAGCAAGTCTTTTTCCAGCTTCATCTTCAGAGACATAACCCT
TGGTGATGTACTTTTGGAATGGGGGGAAGAGAAGTCTGAACAAGGGAATG
TGCTCCCTGAACAAGCCTGTTGTGGCAATGCAGCCAGGGTAAAGGGAAGC
GAATGCGATGCCAGTTTCCTCGTGGAACCGCCTGTGAAACTCTTGCATGG
TAAGCATGTTGCAGACTTTGCTGTCCTTGTAGGCCTTGGCACCGTCAAAA
TCTCCACCGTCAATCATGGATGAGCTGTTTAGCCCATTTAAGCCTCCAGC
AAATCCCCTTAAGTCC
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