CX078040

Overview
NameCX078040
Unique NameCX078040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:135..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.798e-99
Identity = 177/207 (85.51%), Postives = 192/207 (92.75%), Query Frame = -3
Query:  171 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK*NS 791
            FL LVK+ LRP FHVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLE+RE+GSTM+VVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL AN SPE+AA+TRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+AE+K N+
Sbjct:   48 FLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRNA 254          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 6.394e-97
Identity = 179/229 (78.17%), Postives = 196/229 (85.59%), Query Frame = -3
Query:  180 IVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 866
            IV+ LNE Q               VFL LVKS+LR  F VAAQNCWVKKGGAFTGE+SAEMLVNL+IPWVILGHSERR ILNE +EFVGDKVAYAL+QGLKVIACVGETLE+REAGSTM+VVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  N S ++AA TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+K
Sbjct:   23 IVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVK 251          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 351.673 bits (901), Expect = 3.174e-96
Identity = 177/229 (77.29%), Postives = 191/229 (83.41%), Query Frame = -3
Query:  180 IVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 866
            IV  LNEGQ               VFL +VKS LR  FHVAAQNCWVKKGGAFTGE+SAEMLVNL +PWVILGHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQREAGSTM+VVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +A +K
Sbjct:   23 IVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 348.591 bits (893), Expect = 2.687e-95
Identity = 176/229 (76.86%), Postives = 192/229 (83.84%), Query Frame = -3
Query:  180 IVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 866
            IV +LNEGQ               VFL +VKS LRP   VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQRE+GSTM+VVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP QAQEVH  LRKWL AN S E+A +TRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SA +K
Sbjct:   23 IVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.741e-94
Identity = 173/229 (75.55%), Postives = 192/229 (83.84%), Query Frame = -3
Query:  180 IVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 866
            IV++LNE +               VFL  VK+ LR  FHVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +LNE NEFVGDK AYALSQGLKVIACVGETLEQREAGST+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PAQAQEVHFELRKW+  N   ++A + RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSA +K
Sbjct:   23 IVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVK 251          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 338.191 bits (866), Expect = 3.631e-92
Identity = 171/229 (74.67%), Postives = 188/229 (82.10%), Query Frame = -3
Query:  180 IVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 866
            IV+ LN GQ               VFL  VK  LRP   VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTMEVVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +A +K
Sbjct:   23 IVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 332.413 bits (851), Expect = 1.992e-90
Identity = 169/229 (73.80%), Postives = 185/229 (80.79%), Query Frame = -3
Query:  180 IVSVLNEGQXXXXXXXXXXXXXXXVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 866
            IV  LN GQ               VFL +VK+ LRP   VAAQNCWVKKGGAFTGE+SAEML NL +PWVILGHSERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTMEVVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A +K
Sbjct:   23 IVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.687e-89
Identity = 160/190 (84.21%), Postives = 175/190 (92.11%), Query Frame = -3
Query:  180 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 749
            VAAQNCWVKKGGAFTGE+SAEML NL +PWVILGHSERR +LNE NEFVGDKVAYALSQGLKVIACVGETLEQREAG+TMEVVAAQTKAIAD++SSW N+VLAYEPVWAIGTGKVA+PAQAQEVH  LRKW   N S E++A+TRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+AE+K
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVK 192          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.290e-70
Identity = 131/205 (63.90%), Postives = 154/205 (75.12%), Query Frame = -3
Query:  180 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAELK 791
            ++  VKSSL     ++AQNCW+ KGGAFTGEIS E L +L   WVILGHSERR ++ E NEF+G K AYAL+QG+ VIAC+GE LE+REAG T +V   Q KA AD + SW N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG NC ELA Q D+DGFLVGGASLK PEF  I+ S   K
Sbjct:  114 YIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTAK 318          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 6.663e-70
Identity = 130/202 (64.36%), Postives = 155/202 (76.73%), Query Frame = -3
Query:  186 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 791
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  E +E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK A+P QAQEVH  LRKW   N S +++AA RI YGGSV  ANC+ELAA+PD+DGFLVGGASLKPEFI I+ + +
Sbjct:   46 YLTLARSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLKPEFIQIVNARQ 247          
The following BLAST results are available for this feature:
BLAST of CX078040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY1.798e-9985.51Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ARATH6.394e-9778.17Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_MAIZE3.174e-9677.29Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ2.687e-9576.86Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_COPJA1.741e-9475.55Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_SECCE3.631e-9274.67Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU1.992e-9073.80Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_LACSA1.687e-8984.21Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIC_SPIOL2.290e-7063.90Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIS_CULTA6.663e-7064.36Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F01-K2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078040 ID=CX078040; Name=CX078040; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTTTTTTTTTTTAGGAAACAAAGATAATTAAAAAAGTTTAAAAAA
AGGTTTCAGTTGGTCGCGCTTATCAAAAACAAAAGTAATTCTGAAATTAT
ACCAAACGTATTCTATATATCCACAAACAGTAAATACTTCATCAGCAAAC
TGCGCTTGAAATAAAGCTCAAGAATTTTACTTCAGCTCAGCAGATTTGAT
GATGTCAATGAACTCCGGCTTCAACGAAGCACCACCAACCAAAAATCCGT
CAACATCAGGCTGTGCAGCCAATTCCTTGCAGTTTGCACCATTTACGGAT
CCTCCGTAGATGATCCGTGTTGCTGCAGCAATTTCAGGACTGGTGTTTGC
AAGAAGCCATTTCCTCAGTTCAAAATGTACTTCTTGAGCCTGCGCTGGAG
TGGCAACCTTCCCAGTTCCAATAGCCCACACAGGTTCATAGGCCAAAACA
ATGTTTGACCAGCTTGAGACTCGATCTGCGATTGCTTTAGTTTGTGCAGC
AACAACTTCCATAGTAGATCCTGCTTCACGCTGCTCAAGTGTCTCACCAA
CACAAGCAATCACCTTCAAACCTTGAGAAAGTGCATATGCAACCTTATCC
CCAACAAACTCATTTAATTCATTCAAAATGAGTCTCCTTTCAGAATGACC
AAGAATGACCCAAGGAATTTCCAAATTGACGAGCATTTCCGCACTAATCT
CACCGGTGAAAGCACCTCCCTTCTTGACCCAGCAATTCTGTGCCGCAACA
TGAAAGCCAGGCCTCAACGAACTCTTCACCAGTCCAAGAAACACAAACGG
AGGGCTAACAACGACCTCAACGACATCAGAAGATGGAACTTGACCTTCAT
TGAGTACGCTCACTATCT
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