CX078039

Overview
NameCX078039
Unique NameCX078039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX078039_ssr563 microsatellite CX078039_ssr563:563..578. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4913 contig Csv1_Contig4913:1..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX078039 vs. ExPASy Swiss-Prot
Match: PGR5_ARATH (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.502e-41
Identity = 91/135 (67.41%), Postives = 109/135 (80.74%), Query Frame = -1 
Query:  161 MAATSVCAAG-----LSSSFHGSWGASFANGGEEYR-MLARSVPNVRVAR----PIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 535
            MAA S+ A G     + +SF+G WG+S +  GE+Y+ ML+++V   + AR     IR  PMM N+NEGKG+FAP+VV+TRN++GKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Sbjct:    1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 133
The following BLAST results are available for this feature:
BLAST of CX078039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGR5_ARATH5.502e-4167.41Protein PROTON GRADIENT REGULATION 5, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_6E12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6E12-I24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078039 ID=CX078039; Name=CX078039; organism=Citrus sinensis; type=EST; length=781bp
TTTTGTAGAAGAGGATGGATTAATCTTAGGTTACATTCTATTTCTGGGAC
GCACCCAGCTGAAGAAAAGTACGTTTACATTAGAAAGCACTTGAAAAAAC
TATAAACTTAAAACATCTCATGGTGATAACAACACAAAACAATAAATGTT
TTTCTTATCATGCAAGGAAGCCAAGTCTTTCTCCATTCTTCTTAGCCAAA
CGGATGAGGCCTTGCCTTTGCTTTGCATCAGCTCCTATTGATTTGCAGAA
TTCAGTAATTACCTGAGAATGCAAGGCAATAGCTTTGCCTCTAAGCTGAT
TGAACCTCTTCTTGCCAATGATATTACGAGTGAGAACAACAACAGGAGCA
AAAATGCCTTTGCCTTCATTAATGTTCCCCATCATCGGTTGCATTCTAAT
GGGTCTTGCCACTCTAACATTCGGCACTGATCTTGCCAACATCCTGTATT
CTTCACCACCATTAGCAAACGAAGCTCCCCAGCTTCCATGAAACGAAGAT
GATAACCCAGCTGCACATACTGATGTAGCAGCCATAATTGAAACGCTCAA
CACGCACGCGCGCACACACACACACACAAATAGCTTGTGCTTTCAGTGAA
GGAGGCTCAGAGGGTTTGCTAGCTTGTTTGTGGTTTCTGGGGTTGTGCTG
CTGATGAAATGAGAGGATATTTTGTTTGTGAAAATTGATCACTCTCACCA
AATGCCACCATTTCACTATTCTATTAACTCACCAAATACATCACTATCCA
TTAAGCATGTCGTTTAGAAGGTCTACAATTT
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