CX078012

Overview
NameCX078012
Unique NameCX078012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX078012 vs. ExPASy Swiss-Prot
Match: AMPD_ORYSJ (Probable AMP deaminase OS=Oryza sativa subsp. japonica GN=AMPD PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 41/53 (77.36%), Postives = 50/53 (94.34%), Query Frame = -2 
Query:  562 EVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYY 720
            E PSPDE+EAY VLQ+CLE+R++Y+FRE VAPWEKE+I+DPSTPKPNP+PFYY
Sbjct:  214 ETPSPDEIEAYKVLQKCLELREKYMFREEVAPWEKEIITDPSTPKPNPNPFYY 266

HSP 2 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = -3 
Query:   93 AKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQ 221
            AKE +YPVADATTFFTD+H+ILRV+A G++RT+C+ RL LLEQ
Sbjct:  291 AKERIYPVADATTFFTDMHYILRVLAAGDIRTVCYKRLNLLEQ 333
[Close]
BLAST of CX078012 vs. ExPASy Swiss-Prot
Match: AMPD_ARATH (AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.787e-19
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2 
Query:  544 EVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKS 720
            EVP+ DE+EAY  LQECLE+RKRY+F+E VAPWEKE+ISDPSTPKPN +PF + P GKS
Sbjct:  238 EVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQGKS 296

HSP 2 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = -3 
Query:   93 AKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQ 221
            AKE+L+PVADAT FFTDLHH+L+VIA GN+RTLCH RL+LLEQ
Sbjct:  315 AKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQ 357
The following BLAST results are available for this feature:
BLAST of CX078012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AMPD_ORYSJ4.701e-2077.36Probable AMP deaminase OS=Oryza sativa subsp. japo... [more]
AMPD_ARATH1.787e-1972.88AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_6D07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6D07-G14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078012 ID=CX078012; Name=CX078012; organism=Citrus sinensis; type=EST; length=850bp
TAAAGGTCGAACTGATTATTAAAAGAACCTACAAAGAAGGAAAAAAATTC
AAGCATTTAAGTAACTGGTAATTATCCAGAGAAAGTAGTTACTTGCTCCA
GAAGAAGCAGCCGATGATGGCATAAAGTTCTCATATTTCCCAATGCAATA
ACTCGAAGAATGTGATGCAGGTCAGTGAAAAAGGTTGTAGCATCCGCAAC
AGGGTATAGCTCTTCTTTTGCTGGTTAGAGACAGAAAAAAATACAATAAA
CACTAAAGGGAAAAGAGGATAAATATACATTGAAATCCTAAAACAAGTAG
AACTTTGTGAGTCATGACAAAGAAGAAAATCGCAGAAAGGAAGTCTCTTA
CAATCTTTGTTTGGATAAACATGAATAACTCCATCTTGCATCTCAAAATG
ATGCTGCATAAAAATGAAGCATGTTTATGACCAGAAAAGAAAAGCAAATG
AAGCATGTTTATGACCAGAAAAGAAAAGTAAGTGACAATGGTTGACCAAT
GCAGAGGCAAAGGATACGAATCTCATAGGTATAAACTCACATCAGACTTT
CCCACAGGAGCATAATAAAATGGATCTGGATTAGGCTTTGGAGTACTAGG
ATCGGAAATCATTTCTTTCTCCCATGGAGCAACTGCTTCTCTGAATAAAT
ATCTTTTCCGCATTTCAAGGCATTCTTGAAGAACCACATAGGCCTCCATT
TCATCAGGTGATGGCACCTCTGGAAGAAGTTAGAAATATAAGAAGTCAAA
ACTGAATTTAGCATTAATTTTTTCAAACGAAGATATTATAAATCAATCAA
ATTTCATGATCAATAAATTTTTCTAAATGAAGAACATCCTACAAACTATT
back to top