CX077973

Overview
NameCX077973
Unique NameCX077973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT1_ARATH (Adenine phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=APT1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.380e-31
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 1
Query:  166 VRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            +  + G++ARGFIFGPPIA AIGAKFVPMRKPKKLPG++ISEEYSLEYG   +EMHV AV+ GERA+I+DDL+A GGTL+AAIRLL R
Sbjct:  120 ISVVAGVEARGFIFGPPIALAIGAKFVPMRKPKKLPGKVISEEYSLEYGTDTIEMHVGAVEPGERAIIIDDLIATGGTLAAAIRLLER 207          
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT1_WHEAT (Adenine phosphoribosyltransferase 1 OS=Triticum aestivum GN=APT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  166 VRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            +  + G++ARGFIFGPPIA AIGAKFVP+RKPKKLPGE+ISEEYSLEYG   +EMHV AVQ  +R LIVDDL+A GGTL AA +L+ R
Sbjct:   56 ITVVAGVEARGFIFGPPIALAIGAKFVPIRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVQPNDRVLIVDDLIATGGTLCAAAKLIER 143          
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT2_ARATH (Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 1
Query:  163 SVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            ++  + G++ARGFIFGPPIA AIGAKFVP+RKP KLPG +ISEEY LEYG+  +EM V AV++ ERALI+DDLVA GGTLSA+I LL R
Sbjct:   62 NISLVAGVEARGFIFGPPIALAIGAKFVPLRKPGKLPGRVISEEYELEYGRDCLEMSVEAVKSEERALIIDDLVATGGTLSASINLLER 150          
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT_YERPY (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  112 FSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            +S S+    + +SE    V  + G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  ++Q G++ L+VDDL+A GGT+ A ++L+ R
Sbjct:   45 YSASIELLSEHYSESG--VTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRR 148          
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT_YERPS (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  112 FSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            +S S+    + +SE    V  + G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  ++Q G++ L+VDDL+A GGT+ A ++L+ R
Sbjct:   45 YSASIELLSEHYSESG--VTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRR 148          
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT_YERPP (Adenine phosphoribosyltransferase OS=Yersinia pestis (strain Pestoides F) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  112 FSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            +S S+    + +SE    V  + G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  ++Q G++ L+VDDL+A GGT+ A ++L+ R
Sbjct:   45 YSASIKLLSEHYSESG--VTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRR 148          
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT_YERPN (Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  112 FSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            +S S+    + +SE    V  + G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  ++Q G++ L+VDDL+A GGT+ A ++L+ R
Sbjct:   45 YSASIKLLSEHYSESG--VTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRR 148          
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT_YERPG (Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  112 FSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            +S S+    + +SE    V  + G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  ++Q G++ L+VDDL+A GGT+ A ++L+ R
Sbjct:   45 YSASIKLLSEHYSESG--VTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRR 148          
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT_YERPE (Adenine phosphoribosyltransferase OS=Yersinia pestis GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  112 FSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            +S S+    + +SE    V  + G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  ++Q G++ L+VDDL+A GGT+ A ++L+ R
Sbjct:   45 YSASIKLLSEHYSESG--VTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRR 148          
BLAST of CX077973 vs. ExPASy Swiss-Prot
Match: APT_YERPB (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 50/106 (47.17%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  112 FSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGR 429
            +S S+    + +SE    V  + G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  ++Q G++ L+VDDL+A GGT+ A ++L+ R
Sbjct:   45 YSASIELLSEHYSESG--VTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRR 148          
The following BLAST results are available for this feature:
BLAST of CX077973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT1_ARATH4.380e-3173.86Adenine phosphoribosyltransferase 1 OS=Arabidopsis... [more]
APT1_WHEAT1.193e-2870.45Adenine phosphoribosyltransferase 1 OS=Triticum ae... [more]
APT2_ARATH1.010e-2768.54Adenine phosphoribosyltransferase 2 OS=Arabidopsis... [more]
APT_YERPY1.844e-2147.17Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]
APT_YERPS1.844e-2147.17Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]
APT_YERPP1.844e-2147.17Adenine phosphoribosyltransferase OS=Yersinia pest... [more]
APT_YERPN1.844e-2147.17Adenine phosphoribosyltransferase OS=Yersinia pest... [more]
APT_YERPG1.844e-2147.17Adenine phosphoribosyltransferase OS=Yersinia pest... [more]
APT_YERPE1.844e-2147.17Adenine phosphoribosyltransferase OS=Yersinia pest... [more]
APT_YERPB1.844e-2147.17Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6B07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6B07-C14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077973 ID=CX077973; Name=CX077973; organism=Citrus sinensis; type=EST; length=706bp
TTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAATCGATCAGAA
AAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAATTGGACACCCA
TTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAAGTTGTTCAGC
GAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAGCTAGGGGTTT
TATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCAAAGTTTGTTCCTA
TGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGAAGAGTATTCC
TTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTGCTGTACAAGC
AGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATTGGTGGGACCT
TGTCTGCTGCAATCAGGCTACTTGGTCGCTTTGTAAGTTTTAATTTTCAT
TTAGAGCGCTGTCAGAAGATGGTATTGTTACTGGAATTTTCACTGGAAGT
CTTACTAGAAGTCTTGTTGTTGGAGTACTTGCATTAATCTTTGGAAGTTT
TGTTGGGTAACTTGGCTTGGTGGCCGGAATTCTTATTGATTTTCTTAGAG
TTTGATTGGAATTTAACCGTCATTTAATACTTTAGGATGATTTTTTTCAA
TTTGGGATATTTTACTATGTGTTGGTGGTGATCACATTGGATATTAGATT
TATTTT
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