CX077972

Overview
NameCX077972
Unique NameCX077972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4925 contig Csv1_Contig4925:1586..2382. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_CITSI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Citrus sinensis GN=ndhI PE=3 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.128e-96
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = -2 
Query:  164 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRKNV 664
            MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRKNV
Sbjct:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRKNV 167
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_GOSHI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium hirsutum GN=ndhI PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.023e-90
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = -2 
Query:  170 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRK 664
            MFPMVTGFMNYG QT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEL+TYDRHELNYNQIALGRLPMSVIDD+TIRTVLNS QRK
Sbjct:    1 MFPMVTGFMNYGHQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSVIDDYTIRTVLNSIQRK 165
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_GOSBA (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium barbadense GN=ndhI PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.023e-90
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = -2 
Query:  170 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRK 664
            MFPMVTGFMNYG QT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEL+TYDRHELNYNQIALGRLPMSVIDD+TIRTVLNS QRK
Sbjct:    1 MFPMVTGFMNYGHQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSVIDDYTIRTVLNSIQRK 165
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_VITVI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Vitis vinifera GN=ndhI PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.745e-90
Identity = 155/163 (95.09%), Postives = 160/163 (98.16%), Query Frame = -2 
Query:  176 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQ 664
            MFPMVTGFMNYGQQT+RAARYIGQSFMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDIRKK+LLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEL+TYDRHELNYNQIALGRLPMSVIDD+TIRT+LNSPQ
Sbjct:    1 MFPMVTGFMNYGQQTVRAARYIGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSVIDDYTIRTILNSPQ 163
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_MORIN (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Morus indica GN=ndhI PE=3 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.077e-90
Identity = 152/166 (91.57%), Postives = 161/166 (96.99%), Query Frame = -2 
Query:  167 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRKN 664
            MFPM+TGFMNYGQQT+RAARYIGQSFMITLS  NRLP+TIQYPYEK+I +ERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDIRKK+LLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEL+TYDRHELNYNQIALGRLPMSVIDD+TIRT+LNSPQ KN
Sbjct:    1 MFPMITGFMNYGQQTVRAARYIGQSFMITLSHVNRLPITIQYPYEKVIAAERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSVIDDYTIRTILNSPQIKN 166
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_ENCCL (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Encelia californica GN=ndhI PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.477e-89
Identity = 153/165 (92.73%), Postives = 159/165 (96.36%), Query Frame = -2 
Query:  170 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRK 664
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEL+TYDRHELNYNQIALGRLPMS+IDD+TIRT+LN P+RK
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSIIDDYTIRTILNLPERK 165
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_SPIOL (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Spinacia oleracea GN=ndhI PE=3 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.929e-89
Identity = 153/165 (92.73%), Postives = 159/165 (96.36%), Query Frame = -2 
Query:  170 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRK 664
            MFPMVTGF+NYGQQTIRAARYIGQSFMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVR CPIDLPVVDWK ETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEL+TYDRHELNYNQIALGRLP+S+ DD+TIRT+LNSPQ K
Sbjct:    1 MFPMVTGFINYGQQTIRAARYIGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRACPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPISITDDYTIRTILNSPQTK 165
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_SYNNO (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Synedrella nodiflora GN=ndhI PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.520e-89
Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = -2 
Query:  167 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRKN 664
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEL+TYDRHELNYNQIALGRLPMS+IDD+TIRT+LN P+ KN
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSIIDDYTIRTILNLPEIKN 166
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_LASMA (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Lasianthaea macrocephala GN=ndhI PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.520e-89
Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = -2 
Query:  167 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRKN 664
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEL+TYDRHELNYNQIALGRLPMS+IDD+TIRT+LN P+ KN
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSIIDDYTIRTILNLPEIKN 166
[Close]
BLAST of CX077972 vs. ExPASy Swiss-Prot
Match: NDHI_DELBI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Delilia biflora GN=ndhI PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.520e-89
Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = -2 
Query:  167 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYNQIALGRLPMSVIDDFTIRTVLNSPQRKN 664
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEL+TYDRHELNYNQIALGRLPMS+IDD+TIRT+LN P+ KN
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSIIDDYTIRTILNLPEIKN 166
The following BLAST results are available for this feature:
BLAST of CX077972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
NDHI_CITSI2.128e-96100.00NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_GOSHI1.023e-9095.15NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_GOSBA1.023e-9095.15NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_VITVI1.745e-9095.09NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_MORIN5.077e-9091.57NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_ENCCL1.477e-8992.73NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_SPIOL1.929e-8992.73NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_SYNNO2.520e-8992.17NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_LASMA2.520e-8992.17NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_DELBI2.520e-8992.17NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6B06-C12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077972 ID=CX077972; Name=CX077972; organism=Citrus sinensis; type=EST; length=797bp
CTGTCTATATATCATTTCATTTCAATACAAATGTAGTTGTACTTCTCATC
AACCAATCAAAAGTTGGGATTTTGAGTTATTGACCAAGCAAAAAAACAAC
CTTATCCCTTTATACCAACTATACCAAAACTGAACCTTAGTAATTCGAAA
TTAAAAAGGTTTAGACGTTTTTTCGTTGAGGCGAATTCAAGACTGTTCGA
ATTGTAAAATCGTCAATTACTGACATTGGTAAACGACCTAAAGCAATTTG
ATTATAATTCAATTCGTGACGGTCGTAAGTCGCAAGTTCATATTCTTCAG
TCATTGATAAACAATTTGTTGGACAATACTCAACGCAGTTACCACAAAAA
ATACAAATTCCAAAATCAATACTGTAATTAAGCAATCGTTTCTTTCGAAT
ATCTGTTTCAAATTTCCAATCAACAACAGGCAGATCTATAGGACATACCC
GAACGCATACTTCACAAGCAATACATTTATCAAATTCAAAATGGATTCGA
CCACGAAAACGCTCTGATGGGATTAATTTTTCATAAGGATATTGAATAGT
TACAGGTAAACGATTTGCTTGGGATAAAGTAATCATGAAACTTTGACCAA
TGTACCTTGCAGCTCGTATTGTTTGTTGACCATAATTCATGAAACCGGTT
ACCATAGGGAACATATTGTGAATATCTATGAATGTTTTGAGTTTATTTCT
TTCTCTTGTTTGAGACAAGTAGCGAATATTGTATTCCTTTTTTTCTTTAT
CTTTATAGCGAAAGGAGTTGGGAAGAAGTTGTTAATAATAGATTACC
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