CX077970

Overview
NameCX077970
Unique NameCX077970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11474 contig Csv1_Contig11474:359..1173. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.211e-79
Identity = 141/219 (64.38%), Postives = 175/219 (79.91%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 656
            DNNRIA+  GA I NRP+ELQESDVGT  GLFE+KKIGDE+F+F+  C++PKAC++LLRGASKD+LNE+ERNL DA+ VARN++ NPKLVPGGGA E+ ++  L + S  IEG+++WP++A A A E IPRTLAQNCG +V+R MT L+ KHAN  E  + GIDGNTG I DM+E  +WD  +VK QT KT+IEA CMLLRIDDIVSGIKK +  G+GQ
Sbjct:  321 DNNRIARVTGATIANRPEELQESDVGTKCGLFEIKKIGDEYFSFMTKCENPKACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQQWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVSGIKKDKRGGAGQ 539          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.813e-75
Identity = 138/231 (59.74%), Postives = 174/231 (75.32%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA-NGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 692
            DNNRIA+ACGA I +R DEL+E DVGTGAGLFE+KKIGDE+F FI DCKDPKACT++LRGASK++L EVERNLQDAM V RN++ +P LVPGGGA+E++V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH   G   W G+DG  G ++DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK      Q  + P+   +A+
Sbjct:  318 DNNRIARACGARIASRTDELREEDVGTGAGLFEIKKIGDEYFTFITDCKDPKACTIVLRGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKHTQEGCQTW-GVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAILLLRIDDIVSGHKKKGEDHGRQPAAAPEAPQQAE 547          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.813e-75
Identity = 138/226 (61.06%), Postives = 172/226 (76.11%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 656
            DNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  319 DNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.813e-75
Identity = 138/226 (61.06%), Postives = 172/226 (76.11%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 656
            DNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  319 DNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.813e-75
Identity = 138/226 (61.06%), Postives = 172/226 (76.11%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 656
            DNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  319 DNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 281.952 bits (720), Expect = 2.813e-75
Identity = 138/226 (61.06%), Postives = 172/226 (76.11%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 656
            DNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  319 DNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 8.184e-75
Identity = 137/226 (60.62%), Postives = 172/226 (76.11%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 656
            DNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  319 DNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.381e-74
Identity = 136/226 (60.18%), Postives = 172/226 (76.11%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 656
            DNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + D+KE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  319 DNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.062e-74
Identity = 131/217 (60.37%), Postives = 173/217 (79.72%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSG 653
            DNNRI++  GA IVNRP+E+QESDVG   GLFEVK IGDE+F F+ +C++P+AC+++LRGASKD+LNE+ERNL D ++VA+NI  NPKLVPGGGA E+ VS+ L++ SSSIEG+ + P+ A A A EAIP+TLAQNCGV+V+R +T L+ KH    N +IGI+GN+G I+DM E  +W+   VK Q +KTAIE+ACMLLRIDD+VSG+KK++    G
Sbjct:  322 DNNRISRVSGATIVNRPEEIQESDVGKKCGLFEVKLIGDEYFTFMTECENPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEMEVSSHLEKISSSIEGLHQLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKHNQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESACMLLRIDDVVSGLKKQKVAKGG 538          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 9.048e-74
Identity = 130/210 (61.90%), Postives = 167/210 (79.52%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 632
            DNNRIA+ACGA IVNR ++L+E DVGTG GLF + K+GDE++ F+  CK+PKACT+LLRG SKD++NEVERNLQDAM+VARN+  +PKL PGGGATE+ VS  L +K+ SIEG+ +WPY A A A E IPRTL QNCG N I+ +T L+ KHA G++++ GIDG TG + DM E  +W+   VK Q+ KTAIE+AC+LLR+DDIVSG++K
Sbjct:  317 DNNRIARACGANIVNRLEDLREKDVGTGCGLFYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHSF-GIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRK 525          
The following BLAST results are available for this feature:
BLAST of CX077970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
TCPG_OXYGR3.211e-7964.38T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPG_XENLA2.813e-7559.74T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPG_RAT2.813e-7561.06T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_PONAB2.813e-7561.06T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_MOUSE2.813e-7561.06T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_HUMAN2.813e-7561.06T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_BOVIN8.184e-7560.62T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPG_MACFA2.381e-7460.18T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPG_TETPY4.062e-7460.37T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPG_SCHPO9.048e-7461.90T-complex protein 1 subunit gamma OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6B05-C10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077970 ID=CX077970; Name=CX077970; organism=Citrus sinensis; type=EST; length=815bp
CAGACAATAATAGAATTGCCAAAGCATGTGGCGCTGTTATTGTGAACAGA
CCAGATGAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGA
GGTTAAGAAAATTGGGGATGAATTCTTTGCATTCATTGTTGATTGCAAAG
ATCCAAAAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTG
AATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTGGCAAGAAACAT
AATCAAGAATCCAAAACTAGTACCTGGTGGTGGGGCTACAGAATTAACAG
TGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAG
TGGCCTTACGAAGCTGCTGCTATTGCTTTTGAGGCTATTCCAAGAACTTT
GGCTCAGAATTGTGGCGTTAATGTAATTCGGACTATGACTGCTCTGCAAG
GAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAGATGGAAACACT
GGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGATGCATATAATGT
GAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTGCATGCTTCTGA
GGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCA
GGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCAGATGCAGATAG
TGAGCAAATACTCCATGATTAGACAATGTTATTGTCAACGACTATGCAGT
TTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGA
TTTTGCTGAGCTTTT
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