CX077969

Overview
NameCX077969
Unique NameCX077969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX077969_ssr7 microsatellite CX077969_ssr7:7..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11474 contig Csv1_Contig11474:382..1268. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.884e-75
Identity = 135/210 (64.29%), Postives = 168/210 (80.00%), Query Frame = -1
Query:  254 GAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 880
            GA I NRP+ELQESDVGT  GLFE+KKIGDE+F+F+  C++PKAC++LLRGASKD+LNE+ERNL DA+ VARN++ NPKLVPGGGA E+ ++  L + S  IEG+++WP++A A A E IPRTLAQNCG +V+R MT L+ KHAN  E  + GIDGNTG I DM+E  +WD  +VK QT KT+IEA CMLLRIDDIVSGIKK +  G+GQ
Sbjct:  330 GATIANRPEELQESDVGTKCGLFEIKKIGDEYFSFMTKCENPKACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQQWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVSGIKKDKRGGAGQ 539          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 2.156e-71
Identity = 132/224 (58.93%), Postives = 167/224 (74.55%), Query Frame = -1
Query:  218 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA-NGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 886
            ACGA I +R DEL+E DVGTGAGLFE+KKIGDE+F FI DCKDPKACT++LRGASK++L EVERNLQDAM V RN++ +P LVPGGGA+E++V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH   G   W G+DG  G ++DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK      Q  + P+   +A+
Sbjct:  325 ACGARIASRTDELREEDVGTGAGLFEIKKIGDEYFTFITDCKDPKACTIVLRGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKHTQEGCQTW-GVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAILLLRIDDIVSGHKKKGEDHGRQPAAAPEAPQQAE 547          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.156e-71
Identity = 132/219 (60.27%), Postives = 165/219 (75.34%), Query Frame = -1
Query:  254 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 886
            ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  326 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.156e-71
Identity = 132/219 (60.27%), Postives = 165/219 (75.34%), Query Frame = -1
Query:  254 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 886
            ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  326 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.156e-71
Identity = 132/219 (60.27%), Postives = 165/219 (75.34%), Query Frame = -1
Query:  254 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 886
            ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  326 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQTGAPDAGQ 544          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 269.24 bits (687), Expect = 2.156e-71
Identity = 132/219 (60.27%), Postives = 165/219 (75.34%), Query Frame = -1
Query:  254 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 886
            ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  326 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 6.272e-71
Identity = 131/219 (59.82%), Postives = 165/219 (75.34%), Query Frame = -1
Query:  254 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 886
            ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + DMKE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  326 ACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.070e-70
Identity = 126/208 (60.58%), Postives = 166/208 (79.81%), Query Frame = -1
Query:  257 GAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSG 880
            GA IVNRP+E+QESDVG   GLFEVK IGDE+F F+ +C++P+AC+++LRGASKD+LNE+ERNL D ++VA+NI  NPKLVPGGGA E+ VS+ L++ SSSIEG+ + P+ A A A EAIP+TLAQNCGV+V+R +T L+ KH    N +IGI+GN+G I+DM E  +W+   VK Q +KTAIE+ACMLLRIDD+VSG+KK++    G
Sbjct:  331 GATIVNRPEEIQESDVGKKCGLFEVKLIGDEYFTFMTECENPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEMEVSSHLEKISSSIEGLHQLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKHNQEGNKFIGIEGNSGKITDMGEANVWEPIAVKLQVYKTAIESACMLLRIDDVVSGLKKQKVAKGG 538          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.825e-70
Identity = 130/219 (59.36%), Postives = 165/219 (75.34%), Query Frame = -1
Query:  254 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK--------QAPGSGQ 886
            ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +T+L+ KH        G++G TG + D+KE  IW+   VK QT+KTA+E A +LLRIDDIVSG KKK         AP +GQ
Sbjct:  326 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.935e-70
Identity = 124/203 (61.08%), Postives = 160/203 (78.82%), Query Frame = -1
Query:  278 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 886
            ACGA IVNR ++L+E DVGTG GLF + K+GDE++ F+  CK+PKACT+LLRG SKD++NEVERNLQDAM+VARN+  +PKL PGGGATE+ VS  L +K+ SIEG+ +WPY A A A E IPRTL QNCG N I+ +T L+ KHA G++++ GIDG TG + DM E  +W+   VK Q+ KTAIE+AC+LLR+DDIVSG++K
Sbjct:  324 ACGANIVNRLEDLREKDVGTGCGLFYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHSF-GIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRK 525          
The following BLAST results are available for this feature:
BLAST of CX077969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
TCPG_OXYGR1.884e-7564.29T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPG_XENLA2.156e-7158.93T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPG_RAT2.156e-7160.27T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_PONAB2.156e-7160.27T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_MOUSE2.156e-7160.27T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_HUMAN2.156e-7160.27T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_BOVIN6.272e-7159.82T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPG_TETPY1.070e-7060.58T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPG_MACFA1.825e-7059.36T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPG_SCHPO6.935e-7061.08T-complex protein 1 subunit gamma OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6B05-C10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077969 ID=CX077969; Name=CX077969; organism=Citrus sinensis; type=EST; length=886bp
CTTAAAATATATATATATATTGCAGAGCATATCACAGCTTCCCAGTTTGT
CTACAATGGCTAAAACATTGGCGCAATATCACAAAATTTGGAGGAAAAGC
TCAGCAAAATCATTAGACCGCCAACAGAACAATAAACCAACATTTTTTCA
AATAATTAAACTGCATAGTCGTTGACAATAACATTGTCTAATCATGGAGT
ATTTGCTCACTATCTGCATCTGCCTCCGTCTCAATCTGGGGCTTCGATGG
AGCTTGGCCTGAGCCAGGGGCCTGTTTCTTCTTAATTCCACTGACAATGT
CATCAATCCTCAGAAGCATGCAAGCAGCTTCAATTGCTGTCTTAAATGTC
TGTGCTTTCACATTATATGCATCCCAGATCTTCCCCTCTTTCATGTCAGA
AATTGCACCAGTGTTTCCATCTATGCCAATCCATGCATTTTCACCATTTG
CATGTTTTCCTTGCAGAGCAGTCATAGTCCGAATTACATTAACGCCACAA
TTCTGAGCCAAAGTTCTTGGAATAGCCTCAAAAGCAATAGCAGCAGCTTC
GTAAGGCCACTTTTCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAG
TGGCAGACACTGTTAATTCTGTAGCCCCACCACCAGGTACTAGTTTTGGA
TTCTTGATTATGTTTCTTGCCACAGACATTGCATCCTGCAAATTCCTTTC
CACTTCATTCAGGAGATCCTTACTAGCACCTCTTAAGAGTACAGTACAAG
CTTTTGGATCTTTGCAATCAACAATGAATGCAAAGAATTCATCCCCAATT
TTCTTAACCTCAAACAGCCCAGCCCCAGTACCAACATCAGATTCCTGCAA
TTCATCTGGTCTGTTCACAATAACAGCGCCACATGC
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