CX077967
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 9.255e-91 Identity = 166/284 (58.45%), Postives = 216/284 (76.06%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIAR------------ESILGSDQMEREVAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNVIVYCRGNG 818 G+++PNRPI+SF+F+GPTGVGK+ELA ALA YFGS+EAM+R+DMSE+ME+HTVSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+TD KG+TVDFKNT++IMTSN+G SVI + E ++++ V +DE+IVFRQL K+++ EI DIMLKE++ERL+ K I+L VT+ F+ ++++EGYNPSYGARPLRRAI RLLED++AE +L I+EGDSV +D DS GNV V +G Sbjct: 628 GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSG 911
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 4.593e-90 Identity = 165/284 (58.10%), Postives = 216/284 (76.06%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIAR------------ESILGSDQMEREVAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNVIVYCRGNG 818 G+++PNRPI+SF+F+GPTGVGK+ELA ALA YFGS+EAM+R+DMSE+ME+HTVSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+TD KG+TVDFKNT++IMTSN+G SVI + E ++++ V +DE+IVFRQL K+++ EI DIMLKE+++RL+ K I+L VT+ F+ ++++EGYNPSYGARPLRRAI RLLED++AE +L I+EGDSV +D DS G VIV +G Sbjct: 628 GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSG 911
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 2.977e-89 Identity = 163/278 (58.63%), Postives = 213/278 (76.62%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIAR------------ESILGSDQMEREVAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNVIV 800 G+++PNRPI+SF+F+GPTGVGK+ELA +LA YFGS+EAM+R+DMSE+ME+HTVSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+TD KG+TVDFKNT++IMTSN+G SVI + E ++++ V + E+IVFRQL K+++ EI DIMLKE++ RL+ K I+L VT+ F+ ++++EGYNPSYGARPLRRAI RLLED++AE +L G I+EGDSV +D DS GNV V Sbjct: 631 GLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTV 908
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 8.965e-86 Identity = 159/286 (55.59%), Postives = 213/286 (74.48%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIAR-----------ESILGSDQMEREVAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNVIVYCRGNGYVT 827 G+++PNRPI+SF+F GPTGVGK+ELA ALA YFG +EAM+R+DMSE+ME+HTVSK GSPPGYVG+ QLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+T+ KG+TVDFKNT++IMTSN+G SVI + E ++++ V +DE+I+FRQL K+++ EI DI+L+E++ERL+ K ++L VT+ FK+++++EGYNPSYGARPLRRAI RLLED++ E +L I+EGDSV +D DS G V V G+G T Sbjct: 576 GLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEPPQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTNSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYEKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPT 861
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 1.529e-85 Identity = 160/276 (57.97%), Postives = 206/276 (74.64%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIAR----------ESI--LGSDQMEREVAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNV 794 G+++PNRPI+SF+F+GPTGVGKTEL A+A +FGS+EAMVR+DMSEYME+HTVSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N++LQ+L+DGR+TD KG+T+DFKNT++IMTSNIG VI + E+I L +M V +DE+IVFRQL K ++ +I IML+EI+ER++ + I L VT+ FK LIEEGYNPSYGARPLRRA+ RLLED++AE +L+G I+EGD+ +D D V Sbjct: 564 GLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRKRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDSKGRTIDFKNTLLIMTSNIGSKVIEKKGGGLGFELEENIEELQYSRMRNLVNEELKQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKEGDNAMIDVDENKQV 839
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 4.919e-84 Identity = 154/278 (55.40%), Postives = 205/278 (73.74%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIARES-----ILGSDQMERE-------VAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNVIV 800 G+++PNRPI+SF+F+GPTGVGKTEL ALA +FGS+ +M+R+DMSEYME+HTVSK GSPPGYVG+ GG LTEAVR +P++VILFDEIEKAH D+ N++LQ+L+DGR+TD KG+T+DFKNT++IMTSNIG VI + L DQ E + V +DE+IVFRQL K ++ EI ++ML E++ R++ + I L VT+ FK++L+EEGYNPSYGARPLRRA+ RLLED++AE +L+G I+ GDS +D + G V V Sbjct: 534 GLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTV 811
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.431e-83 Identity = 154/278 (55.40%), Postives = 205/278 (73.74%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIARES-----ILGSDQMERE-------VAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNVIV 800 G+++PNRPI+SF+F+GPTGVGKTEL ALA +FGS+ +M+R+DMSEYME+HTVSK GSPPGYVG+ GG LTEAVR +P++VILFDEIEKAH D+ N++LQ+L+DGR+TD KG+T+DFKNT++IMTSNIG VI + L DQ E + V +DE+IVFRQL K ++ EI ++ML E++ R++ + I L VT+ FK++L+EEGYNPSYGARPLRRA+ RLLED++AE +L+G I+ GDS +D + G V V Sbjct: 534 GLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSPVVDVTNEGEVKV 811
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 307.375 bits (786), Expect = 7.103e-83 Identity = 157/278 (56.47%), Postives = 198/278 (71.22%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIARES-----ILGSDQMERE-------VAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNVIV 800 G+++PNRPI+SF+F+GPTGVGKTEL ALA +FGS+EAMVR+DMSEYME+HTVSK GSPPGYVG+ GGQLTE+VR RP++V+LFDEIEK H DV N++LQ+L+DGR+TD KG+TVDFKNT++I+TSN+G VI + L DQ E + V +DE+IVFRQL K ++ EI +IMLKE++ R+ K I L VT FK LI EGYNP YGARPLRRA+ RLLED ++E L I+EGD+ +D D G V V Sbjct: 531 GLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTESVRRRPYTVVLFDEIEKGHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLILTSNVGSKVIEKGGGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRLLEDTLSEEFLAEKIKEGDTAVVDVDDDGKVKV 808
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2) HSP 1 Score: 283.493 bits (724), Expect = 1.098e-75 Identity = 146/266 (54.89%), Postives = 185/266 (69.55%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIARESILG--SDQMEREVAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNV 794 G++DPNRPI SFLF GPTGVGKTELA LA F ++EAM+RIDM+EYMEKH VS+ G+PPGYVG+E GGQLTEAVR RP+SVILFDEIEKAH DV N++LQ+LDDGR+TD G+TVDF+NT+II+TSN+G +I G +++ EV +DE++VFR L K Q+ +IV+I L + RL K I L +T+ K L E GY+P +GARPLRR I R LE +A+ IL G ++EGD V +D G V Sbjct: 580 GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLV 845
BLAST of CX077967 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 1.098e-75 Identity = 146/266 (54.89%), Postives = 185/266 (69.55%), Query Frame = 3 Query: 3 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDFKNTIIIMTSNIGDSVIARESILG--SDQMEREVAXXXXXXXXXXXXXXIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKSIDLTVTDTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNVAELILTGYIQEGDSVTMDCDSGGNV 794 G++DPNRPI SFLF GPTGVGKTELA LA F ++EAM+RIDM+EYMEKH VS+ G+PPGYVG+E GGQLTEAVR RP+SVILFDEIEKAH DV N++LQ+LDDGR+TD G+TVDF+NT+II+TSN+G +I G +++ EV +DE++VFR L K Q+ +IV+I L + RL K I L +T+ K L E GY+P +GARPLRR I R LE +A+ IL G ++EGD V +D G V Sbjct: 580 GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLV 845 The following BLAST results are available for this feature:
BLAST of CX077967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
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Sequences
The
following sequences are available for this feature:
EST sequence >CX077967 ID=CX077967; Name=CX077967; organism=Citrus sinensis; type=EST; length=884bpback to top |