CX077960

Overview
NameCX077960
Unique NameCX077960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.386e-59
Identity = 130/237 (54.85%), Postives = 155/237 (65.40%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQLAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSELKPANGFISYTKPAVQAPAYASSTENIAKLLKGWTRNAQKSASSNSGVTDQNSINNNVNHIAGAESASSEETPSKVASNSTGIELSEAFESLFGFESFDSSNS 712
            LLRCSKSCRLRWTNYLRPGIKRG+FT+ EEKMIIHLQALLGNRWAAIASYLP RTDNDIKNYWNTHLKKK+ KLQ    G  +D +   D     S + +S+GQWERRLQTDIHMAKQALC ALS DK S  ++  P    +  T+P     +  SS ENIA+LL+ W + +  +ASS S      S   + N+ +   S SS   PS+ A ++              F SF+SSNS
Sbjct:   46 LLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENGKCQDGNSSVD-----SDKSVSKGQWERRLQTDIHMAKQALCDALSLDKTSSSTD-DPKLSTVQTTQPRPFQASTYSSAENIARLLENWKKKSPVNASSTSQAGSSESTTTSFNYPSVCLSTSS---PSEGAIST-------------NFISFNSSNS 260          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.809e-28
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV--RKLQLAAAGCSEDNSQYRDELASASS 292
            LLRC KSCRLRW NYLRP +KRGNFTD+EE+ II L  LLGN+W+ IA+ LP RTDN+IKN WNTHLKKKV  R+ + A AG  +  +     L+SA+S
Sbjct:   48 LLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKKKAGAGSGDAGTPATAPLSSATS 146          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.447e-26
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQLAAAGCSEDNSQYRDELASASSQQI 301
            LLRC KSCRLRW NYLRP +KRGNFTD E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+K+K     L + G      +  +E  + SSQ +
Sbjct:   46 LLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK-----LLSHGIDPQTHRQINESKTVSSQVV 140          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 68/166 (40.96%), Postives = 86/166 (51.81%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV---------------------RKLQLAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAALSPDKASILSELKPANGFISYT 436
            LLRC KSCRLRW NYLRP IKRGNF+ +EE  IIHL  LLGNRW+AIA+ LP RTDN+IKN W+THLKK++                        + AAA  +   S  R   +S +   ++    E      I  A  ++CA       S   E +  + F S T
Sbjct:   46 LLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAAAAAAPPASPERSASSSVTESSMASSVAEEHGNAGISSASASVCAKEESSFTSASEEFQIDDSFWSET 211          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 49/71 (69.01%), Postives = 62/71 (87.32%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 214
            LLRC KSCRLRW NYLRP +KRGNFT++E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+K+K+
Sbjct:   46 LLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 59/109 (54.13%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV-----RKLQLAAAGCSEDNSQYRDELASASSQQISRGQ 313
            L RC KSCRLRW NYL P + RGNFTDQEE +II L  LLGNRW+ IA  +P RTDN +KNYWNTHL KK+          AA G     S       S+S Q+IS G+
Sbjct:   46 LKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGDHSTAVKAACGVESPPSMALITTTSSSHQEISGGK 154          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQLAAAGCSEDNSQYRDELASASSQQISRGQWERRLQTDIHMAKQALCAA 370
            LLRC KSCRLRW NYLRP +KRGNF+ +E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++K+    +        NS +     + S +   R       + D   AK A  AA
Sbjct:   46 LLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDPVTHRAINSDHAASNITISFESAQRDDKGAVFRRDAEPAKAAAAAA 168          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25
Identity = 48/71 (67.61%), Postives = 62/71 (87.32%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 214
            LLRC KSCRLRW NYLRP +KRGNFT++E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++K+
Sbjct:   46 LLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25
Identity = 48/71 (67.61%), Postives = 62/71 (87.32%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 214
            LLRC KSCRLRW NYLRP +KRGNFT++E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++K+
Sbjct:   46 LLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25
Identity = 48/71 (67.61%), Postives = 61/71 (85.92%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 214
            L RC KSCRLRW NYLRP +KRGNFT++E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+K+K+
Sbjct:   46 LQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116          
The following BLAST results are available for this feature:
BLAST of CX077960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYB06_ANTMA1.386e-5954.85Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB1_MAIZE4.809e-2861.62Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB6_ARATH3.447e-2656.00Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB4_ORYSJ1.310e-2540.96Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB30_ANTMA1.310e-2569.01Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB23_ARATH1.310e-2554.13Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB1_HORVU1.310e-2546.34Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB4_ARATH2.234e-2567.61Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB08_ANTMA2.234e-2567.61Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB3_ARATH4.977e-2567.61Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A12-A24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077960 ID=CX077960; Name=CX077960; organism=Citrus sinensis; type=EST; length=733bp
ATTGCTTAGATGCAGCAAAAGTTGCAGGCTTAGATGGACTAATTACCTAA
GGCCAGGGATCAAGCGTGGGAATTTCACTGATCAAGAAGAGAAGATGATA
ATTCATCTGCAAGCACTTTTGGGCAACAGATGGGCGGCTATTGCTTCTTA
TCTCCCTCAGAGAACTGACAATGACATCAAGAACTATTGGAATACTCACT
TGAAGAAGAAGGTGAGGAAGCTGCAACTAGCTGCTGCTGGCTGCTCTGAA
GATAATAGCCAATATAGAGATGAGCTAGCTTCAGCTTCTTCACAGCAAAT
CTCAAGGGGTCAGTGGGAGAGAAGGCTGCAGACTGATATTCACATGGCTA
AGCAAGCTCTATGTGCGGCCTTGTCACCAGATAAAGCGAGTATTTTGTCT
GAATTGAAGCCTGCTAATGGGTTCATTTCCTACACAAAACCAGCAGTTCA
AGCACCAGCTTACGCTTCAAGCACTGAGAACATTGCTAAGTTGCTCAAAG
GGTGGACCAGAAACGCTCAAAAAAGTGCTTCTTCGAACTCAGGTGTTACT
GATCAGAATTCAATTAATAACAATGTTAATCACATTGCTGGGGCAGAATC
TGCTTCTAGTGAAGAGACTCCAAGCAAAGTTGCAAGCAACAGTACTGGCA
TAGAATTATCAGAGGCTTTTGAATCGTTGTTTGGTTTTGAGTCTTTTGAT
TCGTCAAATTCTACCGATTTATCTCAATCTGTG
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