CX077957

Overview
NameCX077957
Unique NameCX077957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13185 contig Csv1_Contig13185:106..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 3.099e-111
Identity = 192/208 (92.31%), Postives = 201/208 (96.63%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            VFQIEYAAKAVDNSGT +GIKCKDGIV+GVEKLI SKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIV RAKSEATNYESVYGE +PVKELA RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM+EPSGISYRYFGAAIGKG+QAAKTEIEKLKLSEMTCR+G+IEVAKIIY VHDEAKDKAFELEMSW+CDES R+HQKVP
Sbjct:   21 VFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGIIEVAKIIYKVHDEAKDKAFELEMSWICDESKREHQKVP 228          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 394.045 bits (1011), Expect = 4.948e-109
Identity = 188/208 (90.38%), Postives = 202/208 (97.12%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            VFQIEYAAKAVDNSGTV+GIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRH+GMAVAGLAADGRQIV RAKSEA +YESVYG+ +PVKEL++RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKG+QAAKTEIEKL LSEMTC++GVIEVAKIIY +HDEAKDKAFELEMSW+C+ES R+HQKVP
Sbjct:   21 VFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQKVP 228          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 1.880e-108
Identity = 184/208 (88.46%), Postives = 200/208 (96.15%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            VFQ+EYA KAVDNSGTV+GIKCKDGIV+GVEKL+ SKMML GSNRRIHSVH HSG+AVAGLAADGRQIV+RAKSEA +YE VYGEPI VKELA RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSG+SY+YFGAA+GKGRQAAKTEIEKLKLSE+TCR+G++EVAKIIYGVHDEAKDKAFELE+SW+CDESNRQHQKVP
Sbjct:   21 VFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICDESNRQHQKVP 228          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.776e-74
Identity = 133/208 (63.94%), Postives = 170/208 (81.73%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            VFQ+EYAAKAVDNSGT +G++ KDG+V+ VEKL+ SKM++P +NRRIH+V RH G+A++GL ADGRQ+V+R ++EAT+Y   YG  I  K L +R++++V L +LY  +RPFG  VILG  D++GPQLYMIEPSGIS+ YFG AIGKG +AAKTEIEKLKLSEMT R+ + E AKIIY VHD+AKDKAFELE+SWVC+E+   H+ VP
Sbjct:   19 VFQVEYAAKAVDNSGTALGLRVKDGVVLAVEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDDAKDKAFELELSWVCEETGNLHKFVP 226          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 8.816e-74
Identity = 124/208 (59.62%), Postives = 166/208 (79.81%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            +FQ++YA KAV+NSGT++ IK KDG+V+GVEKL+ SKM+  GSNRR+H +  H G+A+AG  AD RQ++TRA+SEA NY+S YG+PIP+K L+QR+ASY H+ TLY  +RPFGC + + G D+ GPQL+++EPSG    YFGA++GKG+QAAK E+EK+K SEMTCR+ + EV++IIY VHDE KDK FELE+ W+  E+N  HQ VP
Sbjct:   21 LFQVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCREAIKEVSRIIYSVHDEVKDKDFELELGWISTETNNVHQIVP 228          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 264.618 bits (675), Expect = 4.528e-70
Identity = 133/209 (63.64%), Postives = 160/209 (76.56%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            VFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP
Sbjct:   21 VFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGEITNGRHEIVP 229          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 5.914e-70
Identity = 133/209 (63.64%), Postives = 160/209 (76.56%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            VFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP
Sbjct:   21 VFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVP 229          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 262.307 bits (669), Expect = 2.247e-69
Identity = 132/209 (63.16%), Postives = 159/209 (76.08%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            VFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +  +H+ VP
Sbjct:   21 VFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVP 229          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 262.307 bits (669), Expect = 2.247e-69
Identity = 132/209 (63.16%), Postives = 159/209 (76.08%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            VFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+   GSN+R+ +V RH GMAVAGL AD R +   A+ EA+N+ S +G  IP+K LA RVA YVH  TLY  +RPFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +  +H+ VP
Sbjct:   21 VFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVP 229          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.759e-54
Identity = 101/208 (48.56%), Postives = 138/208 (66.35%), Query Frame = -3
Query:  179 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 802
            +FQ EYA KAV+N+ T IGIKC+DG+++ +EK++ SK++ P  N RI SV RH G+A  G   DG+ IV RA+ EAT++   YG PIP   +A R+ +YV L T Y  +RPFG    +  YD +GP LYM+EP+G+ + Y GAA GKGRQ A+ E+EKL  S +  +  V E A+I+Y  HDE  +K  E+EM+WV  E+N  H  VP
Sbjct:   20 LFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTPVP 227          
The following BLAST results are available for this feature:
BLAST of CX077957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA3_SPIOL3.099e-11192.31Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA3_ARATH4.948e-10990.38Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSA3_ORYSJ1.880e-10888.46Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA3_ACACA1.776e-7463.94Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA3_DICDI8.816e-7459.62Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA3_BOVIN4.528e-7063.64Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA3_HUMAN5.914e-7063.64Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_RAT2.247e-6963.16Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_MOUSE2.247e-6963.16Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_SCHPO7.759e-5448.56Probable proteasome subunit alpha type-3 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A09-A18-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077957 ID=CX077957; Name=CX077957; organism=Citrus sinensis; type=EST; length=804bp
TCAAGAGAATCCACCAATCTATTAAATATTTTGAAAATGTTTCGAAAAGT
ATTCCAAGACAAGCCCTGAAATGGCATCAAACTAGTAACCAAATATTATC
AACTCTGCTACACTAATCTGCATCCATCTCTTCCAACGCTGCTCTGGCGG
CTGCCTTAGCTTCCTCAAGAAGCTCATCTGGTACCTTCTGATGCTGGCGG
TTTGATTCATCACAGACCCAGCTCATTTCCAGTTCAAAGGCCTTGTCCTT
AGCCTCATCGTGCACTCCATAAATGATCTTGGCTACTTCAATGACCCCTT
GTCGGCAGGTCATTTCAGAAAGCTTCAACTTTTCAATCTCTGTTTTAGCA
GCCTGCCTGCCCTTTCCAATTGCAGCTCCAAAATACCTATAGGAGATACC
AGAAGGTTCAATCATATACAATTGCGGTCCATCTCTGTCATAACCTCCAA
GAATTACACCACATCCAAAAGGTCTGAGCCACCAATATAGAGTACATAGA
TGCACATAGCTAGCAACTCGTTGAGCAAGTTCTTTAACAGGAATTGGTTC
GCCATATACACTTTCATAGTTTGTAGCTTCAGACTTGGCCCTGGTAACAA
TTTGTCTCCCATCTGCTGCTAATCCTGCAACAGCCATGCCGGAGTGACGA
TGAACGGAATGGATTCTTCTATTGGAACCAGGCAACATCATCTTCGACGC
TATTAGCTTCTCCACTCCCATAACGATGCCATCTTTGCATTTAATTCCAA
TCACAGTCCCGCTGTTGTCGACGGCTTTGGCGGCGTATTCGATCTGGAAA
ACGC
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