CX077942

Overview
NameCX077942
Unique NameCX077942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4902 contig Csv1_Contig4902:225..1084. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.403e-66
Identity = 99/162 (61.11%), Postives = 122/162 (75.31%), Query Frame = -2
Query:  238 NRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL 723
            N LKDMDC   L LLGHYYP CP+P+LT+G   H+D+SFLT+LLQD +GGLQVLH+  WV+V P+ GALVVN+GD++QLI+NDKF SV HRVLA   GPR+SVACFF S+  +   R YGPI E+LSEENPP Y++ T+ EY     S G DGTS L + K+
Sbjct:  205 NHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMA-NPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          

HSP 2 Score: 65.0846 bits (157), Expect = 1.403e-66
Identity = 24/44 (54.55%), Postives = 36/44 (81.82%), Query Frame = -3
Query:  720 KVLYNTNFDFYAAPAANWRDTLSCVMAPNPPDPEELPEVCRDII 851
            K++Y++NFD +++PAANWRDTL C  AP+PP PE+LP  C +++
Sbjct:  135 KMVYSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDLPATCGEMM 178          
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 2.172e-64
Identity = 98/165 (59.39%), Postives = 129/165 (78.18%), Query Frame = -2
Query:  238 NRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKA---RRYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL 723
            N L++MDCAEGL LLGHYYP CP+PELT GT  H+DS FLT+L+QD++GGLQ+L EN+W++V  I GALV+N+ D++QLI+NDKFKSV HRVLA  VGPR+SVA  F    Q+++    R YGPI EL+SEENPPIYKE+TVK++++  ++   D +S L  F+L
Sbjct:  235 NHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRL 399          

HSP 2 Score: 58.151 bits (139), Expect = 2.172e-64
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = -3
Query:  720 RKVLYNTNFDFYAAPAANWRDTLSCVMAPNPPDPEELPEVCRDII 854
            +  LY++N+      A NWRDT+ C+M  N PDP+E P+VCRDI+
Sbjct:  164 KNFLYSSNYVLIPGIACNWRDTMECIMNSNQPDPQEFPDVCRDIL 208          
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.820e-64
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = -2
Query:  238 NRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLA-KDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL 723
            N L DMDC++GL +L HYYP CPEP+LT+GT  H+D+SFLTVLL D++ GLQV  E  W +V  + GAL++N+GD++QLI+NDKF S+ HRVLA +    RVSVACFF +  +    R YGPI EL+SEENPP Y+E T+K+Y ++  + GLDGTS L HFK+
Sbjct:  208 NHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVR-PNPRMYGPIRELVSEENPPKYRETTIKDYATYFNAKGLDGTSALLHFKI 369          

HSP 2 Score: 72.4034 bits (176), Expect = 4.820e-64
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = -3
Query:  720 RKVLYNTNFDFYAAPAANWRDTLSCVMAPNPPDPEELPEVCRDII 854
            R+ LY +NFD +++PAANWRDT SC MAP+ P P++LPE+CRDI+
Sbjct:  137 RRFLYLSNFDLFSSPAANWRDTFSCTMAPDTPKPQDLPEICRDIM 181          
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 6.233e-61
Identity = 90/163 (55.21%), Postives = 117/163 (71.78%), Query Frame = -2
Query:  238 NRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLA-KDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL 723
            N LKDM+C +GL +L HY+P CPEP+LT GT  H+D SFLTVLL D + GLQV  E  W +V  + GAL++N+GD++QLI+NDKF S+ HRVLA +    RVSVACFF +H +    R YGPI EL+SEENPP Y+E T+++Y ++    GL GTS L  FK+
Sbjct:  208 NHLKDMECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVK-PNPRVYGPIKELVSEENPPKYRETTIRDYATYFNGKGLGGTSALLDFKV 369          

HSP 2 Score: 73.1738 bits (178), Expect = 6.233e-61
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = -3
Query:  720 RKVLYNTNFDFYAAPAANWRDTLSCVMAPNPPDPEELPEVCRDII 854
            RK +Y +NFD Y A AANWRDT  C MAP+PP+P++LPE+CRD++
Sbjct:  137 RKFIYLSNFDLYTAAAANWRDTFYCYMAPDPPEPQDLPEICRDVM 181          
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.940e-56
Identity = 93/162 (57.41%), Postives = 120/162 (74.07%), Query Frame = -2
Query:  238 LKD-MDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFF-RSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL 717
            LKD MDC   LF   +YYP CP+PELTMGT  H D  F+T+LLQD +GGLQVLH+N WV+V P  G+LVVN+GD +QL+SNDK+ SV HR ++ +VG R+S+ CFF  S +QS K   YGPI ELLSE+NPP Y+  TVK++ S+ ++ GLDGTS L  +K+
Sbjct:  205 LKDYMDCFH-LFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKL--YGPITELLSEDNPPKYRATTVKDHTSYLHNRGLDGTSALSRYKI 363          

HSP 2 Score: 55.0694 bits (131), Expect = 1.940e-56
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = -3
Query:  732 RKVLYNTNFDFY--AAPAANWRDTLSCVMAPNPPDPEELPEVC 854
            +KV+Y +N D Y  + PAA+WRDT+ C MAPNPP  +E P  C
Sbjct:  130 KKVVYTSNLDLYKSSVPAASWRDTIFCYMAPNPPSLQEFPTPC 172          
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 3.900e-54
Identity = 86/163 (52.76%), Postives = 110/163 (67.48%), Query Frame = -2
Query:  238 NRLKDMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAK-DVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL 723
            N LK+MDCA+GL++L H +P CPEP  T G   H D SFLT+LL D  GGLQVL++  W++V P   AL+ N+GD +QLISNDKF S+ HR+LA     PR+SVACFF   F S  +R YGPI ELLSE NPP Y++ T  E  +H  +   +G S LDH ++
Sbjct:  198 NHLKEMDCAKGLWMLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNNGGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFFVHTFTSPSSRVYGPIKELLSELNPPKYRD-TTSESSNHYVARKPNGNSSLDHLRI 359          

HSP 2 Score: 63.929 bits (154), Expect = 3.900e-54
Identity = 26/45 (57.78%), Postives = 37/45 (82.22%), Query Frame = -3
Query:  720 RKVLYNTNFDFYAAPAANWRDTLSCVMAPNPPDPEELPEVCRDII 854
            +K+ Y++N D Y +PAA+WRDTLSCVMAP+ P  ++LPEVC +I+
Sbjct:  127 KKLKYHSNADLYESPAASWRDTLSCVMAPDVPKAQDLPEVCGEIM 171          
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.678e-22
Identity = 55/134 (41.04%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  277 HYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENE-WVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYSI 675
            ++YP CPEPE  MG  +H DS+ LT+L Q   GGLQV  E   WV V P  G LVVN+GD+  ++SN K  SV HR        R+S+A  +          +  PI++L     P +Y+ IT KEYL   Y +
Sbjct:  210 NHYPVCPEPERAMGLAAHTDSTILTILHQSNTGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHTRSRISIAYLWGGPAGDV---QIAPISKLTGPAEPSLYRSITWKEYLQIKYEV 340          
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.722e-22
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = -2
Query:  295 DMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHEN-EWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYL 711
            D++ A+    L HY P CPEP+  MG  +H DS+ LT+L Q+   GLQV  ++  WV V P  G+LVVN+GD+  ++SN  FKSV HR        R+SVA      +  +   +  P+ +L+S    P+Y+ +T KEYL
Sbjct:  204 DLNWAQAALQLNHY-PVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFL----WGPQSDIKISPVPKLVSPVESPLYQSVTWKEYL 338          
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.943e-21
Identity = 54/149 (36.24%), Postives = 87/149 (58.39%), Query Frame = -2
Query:  295 GMQRYNRLKDMDCAEGLFLLG-HYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYL 738
            G++ +  ++     E ++LL  +YYP CP P+L +G  +H D S++T+L+ + + GLQV  +  W +V  I  AL+V++GD ++++SN K+KSV HR        R+S   F     + E     GPI +LLSE NPP +K    K+Y+
Sbjct:  195 GLEGHEMIEAAGGDEIVYLLKINYYPPCPRPDLALGVVAHTDMSYITILVPNEVQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPSEHE----VGPIPKLLSEANPPKFKTKKYKDYV 339          
BLAST of CX077942 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.653e-21
Identity = 53/159 (33.33%), Postives = 91/159 (57.23%), Query Frame = -2
Query:  238 DMDCAEGLFLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQ-DRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL 711
            D+D  + + +  +YYP CP+P+  +G   H+DS  LTVL+Q + + GLQ+  + +WV V P+  A +VN+GD++++I+N  ++S+ HR +      R+S+A F       E     GP   L+  +    +K +T+KEY    +S  LDG + LD  ++
Sbjct:  206 DVDSVQSMRM--NYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKE----VGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
The following BLAST results are available for this feature:
BLAST of CX077942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCH1_ARATH1.403e-6661.111-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO2.172e-6459.39Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH3_ARATH4.820e-6457.061-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH2_ARATH6.233e-6155.211-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_SOLLC1.940e-5657.411-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH3.900e-5452.76Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
G3OX4_ARATH6.678e-2241.04Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
G3OX1_ARATH8.722e-2240.00Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
FLS_PETHY1.943e-2136.24Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
SRG1_ARATH5.653e-2133.33Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A01-A2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077942 ID=CX077942; Name=CX077942; organism=Citrus sinensis; type=EST; length=859bp
CTTTTTTTTTAGGTCTTTAACAGAAAAAATATTTCCTTCTTTCTTATTTG
TTTCATTTCTTGTTAAAAGAGTTTACATGCAATTGCCGAGCTCAAGCACT
AAGTGCCGACTTGCCTTCAAGCCTATATATTGAGCAGGATTATTCTAAAA
CTTCTTATGCATTTCAACCAATCATTCAATTTCAAATCTCAAGCAAAAGT
TATTAACTGGAATTATGCAGGCACGTCGAATACTTCACAGTTTAAAATGG
TCGAGTGGAGAGGTACCGTCAAGCCCTATTGAGTAACTGTGTGACAGGTA
CTCTTTCACAGTGATTTCCTTGTATATTGGCGGGTTCTCTTCTGAGAGTA
ACTCGTTGATTGGCCCATAACGCCTTGCTTTCTCTGATTGAAAATGTGAT
CTGAAGAAACATGCCACAGACACTCGTGGACCAACATCTTTAGCAAGAAC
TCTGTGATTCACGCTCTTAAACTTGTCATTGGAAATCAGCTGCATCATGT
CTCCGAGATTTACCACTAGAGCTCCATAAATGGGTGTAACATTGACCCAT
TCATTTTCATGGAGGACTTGGAGGCCACCAAGTCTGTCTTGTAGGAGCAC
AGTAAGGAAGCTACTATCAGCATGGCTGTCAGTTCCCATAGTCAACTCTG
GTTCAGGGCATGTTGGGTAGTAATGGCCTAACAAGAACAGTCCCTCTGCG
CAATCCATGTCTTTCAGGCGATTATATCTCTGCATACCTCTGGCAATTCT
TCAGGATCAGGTGGATTAGGAGCCATAACGCAACTGAGGGTATCTCTCCA
ATTAGCTGCTGGTGCTGCATAAAAGTCAAAATTTGTATTATAAAGCACCT
TCCTTTTCT
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