CX077929

Overview
NameCX077929
Unique NameCX077929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX077929 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.289e-50
Identity = 106/189 (56.08%), Postives = 127/189 (67.20%), Query Frame = -3 
Query:  219 LSYASKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCTLLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLAXXXXXXXXXXXXXXXMWDDEGRXXXXXLRFYDGIEEDAGIYGWPPSP 776
            LSY  KIG  A++AIGKHCK L   CRNMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  FP++KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF                  ++DE         + +    D   + WPPSP
Sbjct:  138 LSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFF---------EDGVMGEFYEDEFEHGWDDNFYAENAVLDMEPHIWPPSP 317
The following BLAST results are available for this feature:
BLAST of CX077929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBW2_ARATH1.289e-5056.08F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_5H05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5H05-O9-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077929 ID=CX077929; Name=CX077929; organism=Citrus sinensis; type=EST; length=778bp
CTTATCTCTCACAAAAGAGTGCCAGTTAAGCAAAGCTAAAATATACAAGG
AATATTTCACTTGGAATAGATTATGAGTAACAGTTATAAACAACAACAGT
TCATTCTTACTTAAAACATATGCATGTACTACATACCAACTCCAGCATAA
AGAAGAAGCTCCAACGAGAAAAAGATGCTAGAAACGGAAACAAAGTTGAC
AAGGAATTACAGAGCCTAAGGTGATGGAGGCCAACCATAGATACCTGCAT
CCTCTTCGATTCCATCATAGAACCTTAGCTCAAGCTCTTCCAGCCTGCCT
TCATCATCCCACATTCCCTCGTAGATTTCATCATCATCATCATAGTCACC
CATTTCACCAGCTAGGAATTCCCAGGCCAAATACTCGGATCCATCTGAAT
AATCCGAGCAATCATCCCAGTCATTTATTTCATAGTAGTCCATCACAAAG
GGCCCCAGAACCTTCAAGTTTGGGAAGTTCCCTTTCATGAACTTGTCGTC
AAGTTTCACATCCCAGCACCCTCTCAAATCCAAAAACTCTAGCAGGGTAC
AGCTTGAAAGGATCTTAAGAACAATTTCTGTGCTGATAACATGGTAAGCC
ATCTCAAGTCGCTTAAGTTTTGGCATCGTTGAGGCAATGGCATTGGCCTC
GTCATCTTGTGAGAGCTTGTCAGCTGTATCTAATGGGTGCATGTTTCGGC
ATAGAACCACAAGCAATTTACAGTGTTTTCCTATGGCCTCCAAAGCAGGA
GCACCAATTTTACTGGCATAGCTCAAAT
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