CX077922

Overview
NameCX077922
Unique NameCX077922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077922 vs. ExPASy Swiss-Prot
Match: NU2M_BETVU (NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.925e-19
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 1
Query:   52 YMWAPDIYEGSPPPVTAFLSIAPKIPISANISRVFIYGSYGATLPQI 192
            YMWAPDIYEGSP PVTAF SIAP+  ISANI RVFIYGSYGATL QI
Sbjct:  217 YMWAPDIYEGSPTPVTAFFSIAPERSISANILRVFIYGSYGATLQQI 263          

HSP 2 Score: 31.187 bits (69), Expect = 2.925e-19
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3
Query:    3 PKKTPLPFGLHISFDS 50
            P KTPLPFGL+I FDS
Sbjct:  201 PAKTPLPFGLNIFFDS 216          
BLAST of CX077922 vs. ExPASy Swiss-Prot
Match: NU2M_OENBE (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera bertiana GN=ND2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.421e-17
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPPPVTAFLSIAPKIPISANISRVFIYGSYGATLPQI 192
            I+ +  +MWAPDIYEGSP PVTAFLSIAPKI I ANI RVFIYGSYGATL QI
Sbjct:  230 ITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRVFIYGSYGATLQQI 282          
BLAST of CX077922 vs. ExPASy Swiss-Prot
Match: NU2M_ARATH (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.421e-17
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPPPVTAFLSIAPKIPISANISRVFIYGSYGATLPQI 192
            I+ +  +MWAPDIYEGSP PVTAFLSIAPKI I ANI RVFIYGSYGATL QI
Sbjct:  241 ITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRVFIYGSYGATLQQI 293          
BLAST of CX077922 vs. ExPASy Swiss-Prot
Match: NU2M_MARPO (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha GN=ND2 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPPPVTAFLSIAPKIPISANISRVFIYGSYGATLPQI 192
            I+ +  +MWAPD+YEGSP  VTAF SIAPKI I AN+ RVFIY  Y  T  Q+
Sbjct:  231 ITAVPFHMWAPDVYEGSPTIVTAFFSIAPKISILANMLRVFIYSFYDPTWQQL 283          
The following BLAST results are available for this feature:
BLAST of CX077922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NU2M_BETVU2.925e-1985.11NADH-ubiquinone oxidoreductase chain 2 OS=Beta vul... [more]
NU2M_OENBE5.421e-1779.25NADH-ubiquinone oxidoreductase chain 2 OS=Oenother... [more]
NU2M_ARATH5.421e-1779.25NADH-ubiquinone oxidoreductase chain 2 OS=Arabidop... [more]
NU2M_MARPO3.404e-1160.38NADH-ubiquinone oxidoreductase chain 2 OS=Marchant... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_5H01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5H01-O1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077922 ID=CX077922; Name=CX077922; organism=Citrus sinensis; type=EST; length=194bp
CCCCGAAGAAAACCCCCCTCCCTTTCGGGCTCCATATCTCTTTTGACTCT
ATATATGTGGGCACCTGATATCTATGAGGGTTCACCCCCCCCGGTTACAG
CATTCCTTTCTATTGCGCCTAAAATACCTATTTCTGCTAATATTTCACGT
GTTTTTATTTATGGTTCCTATGGAGCTACATTGCCACAAATCTT
back to top