CX077897

Overview
NameCX077897
Unique NameCX077897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_CITSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Citrus sinensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.899e-51
Identity = 104/115 (90.43%), Postives = 104/115 (90.43%), Query Frame = -2 
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKAD           TLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADGIFGTTIGIFITLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 347
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_CITSI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Citrus sinensis GN=ndhI PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.663e-47
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI
Sbjct:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_SOLTU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum tuberosum GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 97/115 (84.35%), Postives = 98/115 (85.22%), Query Frame = -2 
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSIPYIFVP L  INK             TLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFVPELFGINKGGKVFGTLIGIFITLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 347
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_SOLBU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum bulbocastanum GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 97/115 (84.35%), Postives = 98/115 (85.22%), Query Frame = -2 
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSIPYIFVP L  INK             TLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFVPELFGINKGGKVFGTLIGIFITLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 347
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_VITVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.255e-47
Identity = 97/115 (84.35%), Postives = 98/115 (85.22%), Query Frame = -2 
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG +LSIPYIFVP   EINKA            TLAKTYLFLFIPI TRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDLSIPYIFVPEFFEINKAGEVFGTTIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPI 347
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 8.255e-47
Identity = 97/115 (84.35%), Postives = 98/115 (85.22%), Query Frame = -2 
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSIPYIFVP L  INK             TLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  237 LPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFVPELFGINKRGKVFGTLIGIFITLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 351
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_SOLLC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum lycopersicum GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.255e-47
Identity = 96/115 (83.48%), Postives = 98/115 (85.22%), Query Frame = -2 
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSIPYIFVP +  INK             TLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFVPDIFGINKGGKVFGTLIGIFITLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 347
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_NICTO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tomentosiformis GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.255e-47
Identity = 97/115 (84.35%), Postives = 98/115 (85.22%), Query Frame = -2 
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSIPYIFVP L  INK             TLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFVPELFGINKKGKVFGTLIGIFITLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 347
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_NICSY (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana sylvestris GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.255e-47
Identity = 97/115 (84.35%), Postives = 98/115 (85.22%), Query Frame = -2 
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSIPYIFVP L  INK             TLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFVPELFGINKRGKVFGTLIGIFITLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 347
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_COFAR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica GN=ndhA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.255e-47
Identity = 97/115 (84.35%), Postives = 99/115 (86.09%), Query Frame = -2 
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSIPYIFV  + +INKA            TLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFVSEIFDINKAGKVFGPVIGIFITLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 347
The following BLAST results are available for this feature:
BLAST of CX077897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_CITSI1.899e-5190.43NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NDHI_CITSI1.663e-47100.00NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NU1C_SOLTU6.320e-4784.35NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLBU6.320e-4784.35NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_VITVI8.255e-4784.35NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_TOBAC8.255e-4784.35NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLLC8.255e-4783.48NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NICTO8.255e-4784.35NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NICSY8.255e-4784.35NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_COFAR8.255e-4784.35NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5F11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F11-K21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077897 ID=CX077897; Name=CX077897; organism=Citrus sinensis; type=EST; length=752bp
AATATCTGTTTCAAATTTCCAATCAACAACAGGCAGATCTATAGGACATA
CCCGAACGCATACTTCACAAGCAATACATTTATCAAATTCAAAATGGATT
CGACCACGAAAACGCTCTGATGGGATTAATTTTTCATAAGGATATTGAAT
AGTTACAGGTAAACGATTTGCTTGGGATAAAGTAATCATGAAACTTTGAC
CAATGTACCTTGCAGCTCGTATTGTTTGTTGACCATAATTCATGAAACCG
GTTACCATAGGGAACATATTGTGAATATCTATGAATGTTTTGAGTTTATT
TCTTTCTCTTGTTTGAGACAAGTAGCGAATATTGTATTCCTTTTTTTCTT
TATCTTTATAGCGAAAGGAGTTGGGAAGAAGTTGTTAATAATAGATTACC
GAGAGAAATAGGTAAAAGAAATTTCCAGCCAAGATTTAATAGTTGGTCCA
TTCTTAGTCTCGGTAAAGTCCACCTTGTTGCAATAGGAATGAACAAGAAC
AAATAAGTTTTAGCTAATGTAATAAAGATACCAATTGTCGTTCCAAAGAT
TCCATCCGCTTTATTTATTTCAACCAGCCCAGGAACAAATATGTATGGAA
TGGAAAGATTCGAACCTCCCAAGTAAAGAACTGTTACAAATAATGAGGAA
ACTAGTAGATTTAGATAGGAAGCAACGTAAAATAAACCAAATTTTATTCC
TGAATATTCGGTTTGATAACCGGCTACTAATTCTTCTTCCGCTTCTGGTA
AA
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